Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme143924g00001 ATGTTTACCACCAACAACTCTTTCTCTTCAAACCCGTCTACCTCCGACACGTCATTGTCGAATTCAGAGGGTTCTTACGGGATGTCAGTTACCAACGACGAGGTACGGTTAGCTGTGAGTACCCCGAAGAAGCGTGCAGGGAGGAAAAAGTTCAAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGACGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAAAAGACTAAGATTTGGCTAGGGACTTTTCCAACAGCCGAAATGGCAGCCCGAGCGCATGATGTTGCCTCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCTGACTCGGCGTGGCGGCTACCTAAGCCTGCCACCACTCAGGCAAAAGATATACAAAAGGCGGCTGTACTGGCCGCCGAGGCTTTTAGACCAGACAAGACTTTAAAGA 451 0.51 MFTTNNSFSSNPSTSDTSLSNSEGSYGMSVTNDEVRLAVSTPKKRAGRKKFKETRHPVYRGVRTRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLPKPATTQAKDIQKAAVLAAEAFRPDKTLK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme143924g00001 150 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Trme143924g00001 150 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Trme143924g00001 150 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Trme143924g00001 150 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Trme143924g00001 150 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Trme143924g00001 150 MobiDBLite consensus disorder prediction 1 29 - -
Trme143924g00001 150 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Trme143924g00001 150 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Trme143924g00001 150 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Trme143924g00001 150 MobiDBLite consensus disorder prediction 1 34 - -
Trme143924g00001 150 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 148 IPR045277 GO:0003700
Trme143924g00001 150 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme143924g00001 Trme-Chr143924 1 451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme143924g00001 36 148 AP2-EREBP Transcription Factor Family AT5G51990 75.221 8.14e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme143924g00001 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme143924g00001 - - mtr:25497250 247.669