Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme143803g00001 GGAGCACTAGGATGCATCACACCAGAAGTACTTGAAAAATGGGTGAGAGTTGACTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCACAAATATTCTCAGAAGGTGGACTTGACTACTTAGGAAACCCAAACCTTGTTCATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGACTTGTCGAAGGATTCCGCATCAACGGTCTTCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNGTTACTTTCGCCGAACTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCAATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACCTTGATAACCCTGTTGCTAACAATGCTTGGGTTTATGCTACCAAGTTTGTACCTGGTGCTTAA 483 0.3478 GALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPXXXXXXXXXXXXXXXXXXXXXXXXVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme143803g00001 160 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 159 IPR001344 GO:0009765|GO:0016020
Trme143803g00001 160 Gene3D Chlorophyll a/b binding protein domain 1 153 - -
Trme143803g00001 160 SUPERFAMILY Chlorophyll a-b binding protein 1 157 - -
Trme143803g00001 160 Pfam Chlorophyll A-B binding protein 1 126 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme143803g00001 Trme-Chr143803 3 485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme143803g00001 1 159 Chloroplast and Mitochondria Gene Families AT2G05070 66.038 5.15e-65 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme143803g00001 K08914 - nnu:104605680 262.692