Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme143647g00001 GGGTATGGTAGTTTGGTGGATGTGAAGCCGTTAAAGGCAAGAGTAGGGGCAGTGGGGCCAGTACTGTATAAGAAGGGAGAAGGGTGTGGGGAGTGTTATAAGGTGAAATGTTTGGACCATAGCATATGCTCGAAGCGGGCAGTGACGGTTATAATAACGGATGAGTGTCCTGGCTGCCCGTCTGATAGGACACACTTCGACCTTAGTGGTGCTGCTTTTGGTCACATGGCTGTTAAAGGCGAGAATGGTCAACTTAGAAATAAAGGTGAAATCCCAGTTGTTTACCGAAG 290 0.4828 GYGSLVDVKPLKARVGAVGPVLYKKGEGCGECYKVKCLDHSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVKGENGQLRNKGEIPVVYR 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme143647g00001 96 PANTHER EXPANSIN-B3 1 96 - -
Trme143647g00001 96 SUPERFAMILY Barwin-like endoglucanases 6 96 IPR036908 -
Trme143647g00001 96 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 96 IPR007112 -
Trme143647g00001 96 SMART dpbb_1 15 95 IPR007112 -
Trme143647g00001 96 Pfam Lytic transglycolase 20 95 IPR009009 -
Trme143647g00001 96 Gene3D - 1 96 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme143647g00001 Trme-Chr143647 272 561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme143647g00001 1 96 Expansin Gene Family AT4G28250 75.000 2.24e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme143647g00001 K20628 - qsa:O6P43_028797 189.119