Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme143586g00001 AAACAGATTGAGCCGTTCATCAATGAAGTGATCGTGCTTTCCCAAATCAACCATAGAAATGTAGTAAAGCTTTTAGGTTGTTGTTTAGAGACAGAAGTTCCCTTACTTGTTTATGAATTCATTTCAAACGGTACTGTTTATGAGCATCTTCATGATCAAAACCAAACTTTAAAGCTTACATGGAAAACAAGATTGAGAATAGCAAAAGAAACTGCTGGAGTCCTCGCATACTTGCATTCTGCTGCATCTACACCAATCATACATAGAGATGTGAAATCTACCAATATACTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTGTTCCTCTTGATCATAGTCAGATAACCACCCTAGTGCAGGGTACATTGGGGTATCTTGACCCAGAATATTTCCACACAAGCCAGTTAACAGAGAAGAGTGACGTCTATAGCTTTGGGGTTGTCCTAGCAGAGCTACTGACGGGAAAGAAGGCACTGTCTTTTAGCAGGCCAGAGGAAGATAGGAACCTTGCATTGTACTTTCTTTCTTCAATGAAAGAG 561 0.4011 KQIEPFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGTVYEHLHDQNQTLKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQITTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFSRPEEDRNLALYFLSSMKE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme143586g00001 187 SUPERFAMILY Protein kinase-like (PK-like) 3 173 IPR011009 -
Trme143586g00001 187 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme143586g00001 187 SMART serkin_6 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme143586g00001 187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Trme143586g00001 187 Pfam Protein tyrosine and serine/threonine kinase 3 165 IPR001245 GO:0004672|GO:0006468
Trme143586g00001 187 FunFam Protein kinase superfamily protein 1 44 - -
Trme143586g00001 187 FunFam Wall-associated receptor kinase 2 41 187 - -
Trme143586g00001 187 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 187 IPR045274 GO:0007166
Trme143586g00001 187 Gene3D Transferase(Phosphotransferase) domain 1 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme143586g00001 Trme-Chr143586 1 561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme143586g00001 2 187 Receptor kinase-like Gene Family AT1G21230 72.581 1.55e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trme143586g00001 PK_Tyr_Ser-Thr 6.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme143586g00001 - - mtr:25489730 333.569