Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme143360g00001 AGCATAGTAGGGCGTCCACGTCATACAGGGGTAATGGTTGGAATGGGACAAAAAGATGCATATGTAGGTGATGAAGCACAATCGAAGAGAGGTATATTGACATTGAAATATCCAATTGAGCATGGAATTGTTAGTAATTGGGATGATATGGAGAAGATCTGGCATCATACTTTCTACAATGAACTTCGTGTTGCTCCTGAAGAACATCCTGTTCTTCTTACTGAAGCACCTCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAGATCATGTTTGAGACATTCAATACTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCTCTTTACGCTAGTGGCCGTACAACTGACACACACGACACTAAGATTGACGGATAA 381 0.4068 SIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTDTHDTKIDG 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme143360g00001 126 Pfam Actin 1 117 IPR004000 -
Trme143360g00001 126 FunFam Actin, alpha skeletal muscle 1 120 - -
Trme143360g00001 126 SMART actin_3 1 126 IPR004000 -
Trme143360g00001 126 SUPERFAMILY Actin-like ATPase domain 1 114 IPR043129 -
Trme143360g00001 126 ProSitePatterns Actins signature 1. 21 31 IPR004001 -
Trme143360g00001 126 PANTHER ACTIN 13 117 IPR004000 -
Trme143360g00001 126 Gene3D - 1 123 - -
Trme143360g00001 126 PRINTS Actin signature 17 28 IPR004000 -
Trme143360g00001 126 PRINTS Actin signature 83 96 IPR004000 -
Trme143360g00001 126 PRINTS Actin signature 108 126 IPR004000 -
Trme143360g00001 126 PRINTS Actin signature 29 51 IPR004000 -
Trme143360g00001 126 CDD NBD_sugar-kinase_HSP70_actin 42 122 - -
Trme143360g00001 126 FunFam Actin, alpha skeletal muscle 2 39 - -
Trme143360g00001 126 ProSitePatterns Actins and actin-related proteins signature. 72 84 IPR020902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme143360g00001 Trme-Chr143360 1 452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme143360g00001 1 117 Cytoskeleton Gene Families AT3G12110 100.000 2.38e-84 249