Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14329g00001 TGTAGTCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTACCATGTTTTGTCGGATGAAAATCAGTTCACATCCGATGAACTTCAGAAGCTGGTTTACAATTTGTGCTTTACTTTTGTTAGATGTACTAAGCCAATTTCTTTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGTAGACTCTACCTCGAGAGATCAGAGTCATTAGGTTTGTTCAGAAGTGATTCTACATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTACCTAAACTTAGCGAAAACATAAAGAAGCTGATGTTTTACTGCTAG 324 0.3981 CSHWGVKGTSRPTHYHVLSDENQFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSDSTLSRAAPPKTPPLPKLSENIKKLMFYC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14329g00001 107 Gene3D - 1 107 IPR036397 GO:0003676
Trme14329g00001 107 ProSiteProfiles Piwi domain profile. 1 68 IPR003165 GO:0003676
Trme14329g00001 107 Pfam Piwi domain 1 65 IPR003165 GO:0003676
Trme14329g00001 107 SUPERFAMILY Ribonuclease H-like 1 68 IPR012337 -
Trme14329g00001 107 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14329g00001 Trme-Chr14329 1 324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14329g00001 1 107 Eukaryotic Initiation Factors Gene Family AT5G43810 51.818 9.62e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14329g00001 K11593 - gmx:100797755 214.542