Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14328g00001 ATGGAGAGGTACAAATTAATTAAGGAAGTTGGTGATGGAACATTCGGGAGTGTCTGGAGAGCCATTAATAAGCAAAGCGGTGAAGTTGTTGCGATCAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGTCACTACGAAAAATGACTCACTCAAATGTTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTCTGTACCTTGTTTTTGAGTACATG 246 0.3902 MERYKLIKEVGDGTFGSVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMTHSNVVKLKEVIRESDILYLVFEYM 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14328g00001 82 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Trme14328g00001 82 FunFam cyclin-dependent kinase F-4-like 1 82 - -
Trme14328g00001 82 SUPERFAMILY Protein kinase-like (PK-like) 1 82 IPR011009 -
Trme14328g00001 82 ProSiteProfiles Protein kinase domain profile. 4 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14328g00001 82 Pfam Protein kinase domain 4 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14328g00001 82 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 82 - -
Trme14328g00001 82 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14328g00001 Trme-Chr14328 19 526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14328g00001 1 82 Core Cell Cycle Gene Families AT3G48750 37.349 6.91e-16 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Trme14328g00001 Pkinase 9.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14328g00001 K08829 - gmx:100810150 159.844