Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme143281g00001 ATGTTTTGTATTTTATTTGCTTTAGGCAACCAAAAAGGCTCAAGGGGGTCAGCTCCTGCCAAACCTGAAACACAAAAGGCACCACCACCTATCGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAGAAAACTGACAACTTTGGGTCAAAGGCATTGATTGGTGAAGGGTCGTATGGGAGAGTGTATTATGCAACATTAAACAATGGAAAAGCTGTGGCTGTGAAAAAGCTTGATGTTTCCATGGTCTCAAGATTGAAGAATGACAATTTTGTTGAGTTGCATGGATACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATTTTGCACG 364 0.4121 MFCILFALGNQKGSRGSAPAKPETQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSMVSRLKNDNFVELHGYCVEGNLRVLAYEFATMGSLHDILH 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme143281g00001 121 ProSiteProfiles Protein kinase domain profile. 48 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme143281g00001 121 SUPERFAMILY Protein kinase-like (PK-like) 27 121 IPR011009 -
Trme143281g00001 121 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Trme143281g00001 121 Gene3D Phosphorylase Kinase; domain 1 14 110 - -
Trme143281g00001 121 MobiDBLite consensus disorder prediction 12 31 - -
Trme143281g00001 121 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 12 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme143281g00001 Trme-Chr143281 17 538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme143281g00001 30 121 Strubbelig Receptor Gene Family AT4G22130 40.187 5.31e-19 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trme143281g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme143281g00001 K13436 - gmx:548003 210.305