Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme143258g00001 ATGAAGGATAACGGTGTTGATGCCGGTCAGAAGCGACTAACCGWGCAAGATGCATTAGCGTTTCTTAAGGATGTAAAAGTTGCGTTTCAAGATGAGAGGGAAAAATACGATGAGTTTATAAAAATTATGAAGGATTTCAAGGCTTCCGAAATTAATACAATTGGCGTCCGATCAAGAGTGAATGAGCTGTTTAAAGGACATAAAGATTTAATTTTGGGATTCAACAACTTCCTGCCAAAGGGATATAAAATG 252 0.373 MKDNGVDAGQKRLTXQDALAFLKDVKVAFQDEREKYDEFIKIMKDFKASEINTIGVRSRVNELFKGHKDLILGFNNFLPKGYKM 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme143258g00001 84 ProSiteProfiles PAH domain profile. 11 81 IPR003822 GO:0006355
Trme143258g00001 84 FunFam Paired amphipathic helix protein Sin3 17 79 - -
Trme143258g00001 84 Pfam Paired amphipathic helix repeat 34 78 IPR003822 GO:0006355
Trme143258g00001 84 SUPERFAMILY PAH2 domain 11 80 IPR036600 GO:0006355
Trme143258g00001 84 Gene3D Paired amphipathic helix 17 79 IPR036600 GO:0006355
Trme143258g00001 84 PANTHER SIN3B-RELATED 12 83 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme143258g00001 Trme-Chr143258 14 265 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme143258g00001 13 84 WRKY Transcription Factor Family AT4G12020 48.611 1.01e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme143258g00001 PAH 6.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme143258g00001 K11644 - tpra:123882166 160.229