Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14278g00001 ACGACGCGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTGGAGGAGTGAAACTTAGTTGGCCGGTTCGTCAGAAGATTGCTCTTGGAACTGCTAGGGGATTGGCTTATTTGCATTATGGAGCTCAACCTGCTATTATTCATAGGGATATTAAAGCAAATAATATACTTTTGGATGATAAGTTTGAAGCTAAGGTTGCTGATTTTGGACTTGCAAAGTTTAATCCTGAGGGAATGACTCATATGAGTACAAGGGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAAAGGAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTATTGAGTGGAAGAAAAGCTCTTGAAACGAACGATGATGGACAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACGGGAAATGCGTTGGATGTTATTGAAGATGGGATGCCGGAACAAGGTTCAAATCAAGTTCTTGAGAAGTATGTGTTGATTGCCGTGCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGAGGATGAAGTGCCCACGATACCCGGACGGCCGATTCCTCTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGCTAGCAGTTTTGGCGGCTCCGGTCAGCTCTCTAGTCCAACAGGTTATCAATCGTTCACGTTAGAAATGGGAAGTGAACAACATTCTTCTAATCATTCTAGGGATGAAAAACGCTCCACCTCTAGGATGTTGAGTTCGGATTTGGATCAGTGA 858 0.4254 TTRLEGYQRIIVCDLMKNGSLHDHLFGSGGVKLSWPVRQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALETNDDGQPSALTDWAWSLVRTGNALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETEDEVPTIPGRPIPLVAGRLDIERSASSFGGSGQLSSPTGYQSFTLEMGSEQHSSNHSRDEKRSTSRMLSSDLDQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14278g00001 285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 5 219 - -
Trme14278g00001 285 MobiDBLite consensus disorder prediction 237 262 - -
Trme14278g00001 285 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14278g00001 285 MobiDBLite consensus disorder prediction 237 285 - -
Trme14278g00001 285 ProSitePatterns Serine/Threonine protein kinases active-site signature. 60 72 IPR008271 GO:0004672|GO:0006468
Trme14278g00001 285 Gene3D Transferase(Phosphotransferase) domain 1 16 217 - -
Trme14278g00001 285 MobiDBLite consensus disorder prediction 263 279 - -
Trme14278g00001 285 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 16 217 - -
Trme14278g00001 285 Pfam Protein kinase domain 8 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14278g00001 285 SUPERFAMILY Protein kinase-like (PK-like) 8 220 IPR011009 -
Trme14278g00001 285 SMART serkin_6 4 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14278g00001 Trme-Chr14278 1 858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14278g00001 1 256 Receptor kinase-like Gene Family AT2G48010 77.043 2.70e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trme14278g00001 Pkinase 2.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14278g00001 - - gmx:100800760 488.804