Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14253g00001 ATGAATGCTCTACCACTTGGAGTTCAACTAGATGAGCTTGTACATTTACAAATGATCAATAGTAAAGTTAAACAGTTGTGGAATGGAAATGAGTATTTTGGAAAGCTGAAAGTAATTGATTTGAGTAACTCCAAAGATTTACGTCAAACTCCAAACATCTCTGGAATTCCAAATCTTGAAGAGCTGTATCTTAATGATTGTACAAAACTTGTTGAAGTTCACCAATCTATCAGAAAGCACAAAAACCTCATGATAGTTAGCTTGATGGGATGTGTCGATCTGAAAAACTTTCCAAGTAAATTGGAAATGTGTTCCTTGAAAATGCTATTTCTATCTGACTGCTCAAATGTTAAAAGACTTCCTGATTTCGGGGAAAATATGACAGCCATCACGACTCTCAACTTGATGAATTGCAAAAGTCTTCTATACCTTCCAAACAGCATTAGTAACCTGAAGTCTCTCAGAATTCTCAACATATCAGGATGTTCAAAAATTTGGACCCTGCCAAATGGTATAAATCAAAACAAGGCTTTGAAGGACATTGACTTGAGCAGAACTGCTATTAGAGAATTGCATCCAGCCCTATTTCAGTTAGAAAATATCAAAAGATTATCTATCAGTGGATGTAGTGGGCCAACATCCAATTTCAGCTGGGAGTTTCGGCTGCCTTTTGGCAAGTTGTTCAGGTTTTTCCCATCTCAGACAAGCTTAACATTGCCCCCTTTTGTATCAGCCCTTTCCTCATTAACTGAATTGGATTTAAGCTATTGCAATCTCACTGATAATTCAATTCCCCGNNNNNNNNATTGCTTATCATCGTTAGAGAGACTAAATCTAAGTGGGAACAATTTTGTACGCCTTCCGACTCATTACATTGCTAATCTTACAAAGCTTCGTTATCTTGAATTGGAAGATTGCCCACAGCTTCGATCTTTACCTATGCTTCCACCACATGTACGCTTGTACGTAACAGATTCAGATGCAAGGGAAGCTAATGCATTAGATCCACAAAAGATATGGAAGGTGTTTGAATCAAGTGAAAAAGAATTCTTACAGTCATCTGTATATCGAATGTTTGATATCTTTGATCCGGTGTACTTTGAAATCCCATCGAGATTTGATAATCAGAAGTTTTTTCCCTTGAGCTCGTCGTATGTGTCAAAACTTGATTCAATTGCTTCAGTAACAGTGGACATCCCTGATGATTGTCTTTCAAGTGACTGGTGGGGTGTGGCTGTATTTGTGGCCTTAGAAGCTGAAGTT 1263 0.3753 MNALPLGVQLDELVHLQMINSKVKQLWNGNEYFGKLKVIDLSNSKDLRQTPNISGIPNLEELYLNDCTKLVEVHQSIRKHKNLMIVSLMGCVDLKNFPSKLEMCSLKMLFLSDCSNVKRLPDFGENMTAITTLNLMNCKSLLYLPNSISNLKSLRILNISGCSKIWTLPNGINQNKALKDIDLSRTAIRELHPALFQLENIKRLSISGCSGPTSNFSWEFRLPFGKLFRFFPSQTSLTLPPFVSALSSLTELDLSYCNLTDNSIPRXXXCLSSLERLNLSGNNFVRLPTHYIANLTKLRYLELEDCPQLRSLPMLPPHVRLYVTDSDAREANALDPQKIWKVFESSEKEFLQSSVYRMFDIFDPVYFEIPSRFDNQKFFPLSSSYVSKLDSIASVTVDIPDDCLSSDWWGVAVFVALEAEV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14253g00001 421 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 126 214 - -
Trme14253g00001 421 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Trme14253g00001 421 SMART LRR_typ_2 151 175 IPR003591 -
Trme14253g00001 421 SMART LRR_typ_2 176 198 IPR003591 -
Trme14253g00001 421 SMART LRR_typ_2 246 270 IPR003591 -
Trme14253g00001 421 SMART LRR_typ_2 271 294 IPR003591 -
Trme14253g00001 421 Gene3D Ribonuclease Inhibitor 123 327 IPR032675 -
Trme14253g00001 421 Gene3D Ribonuclease Inhibitor 2 122 IPR032675 -
Trme14253g00001 421 SUPERFAMILY L domain-like 8 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14253g00001 Trme-Chr14253 1 1468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14253g00001 1 204 WRKY Transcription Factor Family AT4G12020 34.483 1.71e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14253g00001 - - vvo:131658213 671.774