Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme142519g00001 GTCACTGGAGATGTTTTAAGGATTAGGCAAATTCTGACAAATTTAGTCAGCAATGCCGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTATTCCAGAGCCACCATCTTCAGTTAACAGTGAATGCTCAATCAATGATGATACTGAGGATCAAACTCGTTCAACCGAAACAACAGTGTGGATACGATGTGATGTATACGACACAGGAATTGGCATACCAGAAAAGACTATACCTACTTTATTTAGAAAAGACCATACTCAAAAATATGGAGGCAAAGGTCTAGGACTAGCAATATGTAATCAACTG 318 0.3774 VTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVIPEPPSSVNSECSINDDTEDQTRSTETTVWIRCDVYDTGIGIPEKTIPTLFRKDHTQKYGGKGLGLAICNQL 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme142519g00001 106 ProSiteProfiles Histidine kinase domain profile. 1 106 IPR005467 -
Trme142519g00001 106 Gene3D - 1 106 IPR036890 -
Trme142519g00001 106 SMART HKATPase_4 3 106 IPR003594 -
Trme142519g00001 106 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2 106 IPR036890 -
Trme142519g00001 106 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 3 106 IPR003594 -
Trme142519g00001 106 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 2 106 - -
Trme142519g00001 106 PRINTS Bacterial sensor protein C-terminal signature 94 106 IPR004358 GO:0016310|GO:0016772
Trme142519g00001 106 PRINTS Bacterial sensor protein C-terminal signature 65 79 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme142519g00001 Trme-Chr142519 34 563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme142519g00001 1 106 Histidine Kinase Gene Family AT5G10720 62.281 4.78e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme142519g00001 - - tpra:123916259 207.223