Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme142455g00001 GGAGGCCGGACAATTATATTTGCAGAGAAAAAGGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGTGCGAGAGCTCTCCATGGTGATATACAGCAGTCACAGCGTGAGGTTACATTGAAAGCTTTTAGGTCTGGGAAATTCTTGACATTGGTGGCCACCAATGTGGCAGCCAGGGGTCTAGACATTAATGATGTTCAGTTGATTATCCAG 213 0.4695 GGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLKAFRSGKFLTLVATNVAARGLDINDVQLIIQ 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme142455g00001 71 Pfam Helicase conserved C-terminal domain 1 70 IPR001650 -
Trme142455g00001 71 Gene3D - 1 71 IPR027417 -
Trme142455g00001 71 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 3 71 - -
Trme142455g00001 71 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 70 IPR027417 -
Trme142455g00001 71 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 71 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme142455g00001 Trme-Chr142455 139 544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme142455g00001 26 70 Eukaryotic Initiation Factors Gene Family AT3G13920 42.222 1.65e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme142455g00001 K16911 - psat:127074425 132.109