Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme142197g00001 ATGCTAGATGGAAGAGTTGATGGGATATACAAGGTCAAAAAATGGAAAGTTGAAGAATCTTTGAAGCTTTTTAGCTTAGGAGCCTTCAAACAACGACACCCTAAAGAAGGTTATGAGGTTCTCTCGAAAAGGGCAGTTGCATATGCTGGAGGCATTCCATTAGCCTTAAAAGTTTTGGGTTCTCATTTGTATTCCAGAGGAACTGATTTCTGGGAATCCGAATTGAAACATCTTGAGAACAATGTGGAATCTTTGAGCAAAATTGAGAAAGTGTTAAAAGGGAGTTATGATGGATTAACAATACGGGAGAAGGAAATCTTTCTAGACATTGCGTTCTTTTACA 343 0.379 MLDGRVDGIYKVKKWKVEESLKLFSLGAFKQRHPKEGYEVLSKRAVAYAGGIPLALKVLGSHLYSRGTDFWESELKHLENNVESLSKIEKVLKGSYDGLTIREKEIFLDIAFFY 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme142197g00001 114 Coils Coil 68 88 - -
Trme142197g00001 114 Gene3D - 16 100 IPR042197 -
Trme142197g00001 114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 110 IPR027417 -
Trme142197g00001 114 Pfam NB-ARC domain 11 96 IPR002182 GO:0043531
Trme142197g00001 114 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 113 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme142197g00001 Trme-Chr142197 1 343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme142197g00001 5 114 WRKY Transcription Factor Family AT5G45050 36.364 2.76e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme142197g00001 - - cam:101488696 184.111