Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme142138g00001 TATTGTGAAGAAGGTGGTGAAAGACTACTTGTTTATGAGTACATGGCTCATGGATCATTGCATCAACACCTCCATGGCAAAAGTAAAGAGTTGAAAGAACAATTGGATTGGATCAGAAGGGTAACAATTGCGGTCCAAGCGGCTCGAGGAATCGAGTACTTGCACGGCTACGCGTGTCCGCCTGTGATTCACAGAGATATCAAATCTTCAAACATACTCATTGATGAAGAACACAATGCTAGAGTTTCGGATTTCGGTCTGTCGTTACTAGGTCCGACAGATAGTAGCTCGCCACTTGCCGAGTTACCGGCCGGAACACTCGGTTATCTTGATCCAGAATACTATAGACTTCACTACCTCACAACAAAATCAGATGTTTATAGCTTTGGTGTTCTACTATTAGAAATTCTAAGTGGTAGAAAAGCTATTGACATGCAATATGAAGAAGGTAACATTGTTCAATG 464 0.4181 YCEEGGERLLVYEYMAHGSLHQHLHGKSKELKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme142138g00001 154 ProSiteProfiles Protein kinase domain profile. 1 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme142138g00001 154 Pfam Protein tyrosine and serine/threonine kinase 2 142 IPR001245 GO:0004672|GO:0006468
Trme142138g00001 154 SMART serkin_6 1 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme142138g00001 154 SUPERFAMILY Protein kinase-like (PK-like) 1 145 IPR011009 -
Trme142138g00001 154 FunFam Receptor protein kinase CRINKLY4 15 154 - -
Trme142138g00001 154 Gene3D Transferase(Phosphotransferase) domain 1 1 154 - -
Trme142138g00001 154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 62 74 IPR008271 GO:0004672|GO:0006468
Trme142138g00001 154 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 149 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme142138g00001 Trme-Chr142138 79 542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme142138g00001 1 154 Receptor kinase-like Gene Family AT3G59420 92.208 2.85e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme142138g00001 PK_Tyr_Ser-Thr 3.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme142138g00001 - - csv:101210393 306.219