Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1418g00001 ATGGCTAACATGACACCTTCCACTCCAATCTGTGACATTGTACCTGGAAAAATTGATTTCCAATTAAGGGTGTGTGTAATTCATGTATGGACCGTACCGGATCGTGTTAACCCCATGGAAGATGGAAGCATTCACATGCTGTTTCTTGATGACAAATGTGGAAAAATTCATGCGACAATTCGAAAGGATCTCATTCCTAAGTTTAAGGATCAAATTGAGGAAGGTGCTGCTTATGTGTTTGAGAATTTTATGGTTGGAAGCTGCGACCAGTCATACAAGGCTGCTGACCACAAGTTCAAACTTAATTTCATGAAGTCGACCAAAATTTGGAAAGTATCTGCTCCTGAAATCCTCAGATACCATTTCAATTTTGTATCCTTTCCAGATATTCTGAGTGCTAATTACGAGCCTAGGTTGCTTGATGTCATTGGCCACATTGTTGAGCGAACTGATGTTAAGGAAACCGAGATTAATGGAAAAATGAGCAAAGTTTTGGACGTGACACTGGAGGATTTAGAAGCTAATAGGGTTCACTGCACCCTTTGGGATGAATATGCCGACCGTCTGCAGACATTTATGGACACCCATAACAAATCTGAACCTGCTGTTATGATACTACAGCTTTGCAAGCTTAAAAAGTATTTTGGTGCTATGGGAGTGTCCAATACATTTTATGGAACTAAGATGCTGTTGAATGCTGATGTGCCAGATATTGTGGAGTATAAATTGCAGATGGATGGAACAGAACGCCAGTTAACTCAAGGTGTTAGCCAACTCACTGGACCGACCATACTTAGTTTGTCGGATGAGTTACTTCAAACACAAAGGATGACAATTGAGGATTTGTTTGAGTGCTCACAGAAATGTTTTGGAACAGTTCTGGTAAGGACCTGTGATATCGAGGCTGCTTTAGGCTGGTATTACCATGCATGTACCAGTTGTGCATCTAAATTTACTATAAGAGATGGCTCCATTTACTGTGGAAAATGTCGTGAGCATAAGACTGCAGTTCCTAGGTACAAGGTTCACCTGCAAGTAATAGACAACTCCGGCTCAGCTACTTTCACTTTGTTTGATCGTGTTGTCTCGCAAGTGTTGGGCAGAAGTGTTCAAGATCTTCTTGCAGATATGAATCAAGATCAAGTCTACCCACCCGAGCTCGACACCTTTGTCGATAAACAGATGCTGTTCAAAGTCGATGTCAATGATGCAAACATCTTTCGCNCCGAGCTCGACACCTTTGTCGATAAACAGATGTTGTTCAAAGTCGATGTCAATGATGCAAACATCTTTCGCAATTATCGAAGTTACAATGTGAAAAGAATGACCGATGATGTGGAAATCATCAATCAGTTCATAAATCTTTATGCTCTTAAT 1377 0.4074 MANMTPSTPICDIVPGKIDFQLRVCVIHVWTVPDRVNPMEDGSIHMLFLDDKCGKIHATIRKDLIPKFKDQIEEGAAYVFENFMVGSCDQSYKAADHKFKLNFMKSTKIWKVSAPEILRYHFNFVSFPDILSANYEPRLLDVIGHIVERTDVKETEINGKMSKVLDVTLEDLEANRVHCTLWDEYADRLQTFMDTHNKSEPAVMILQLCKLKKYFGAMGVSNTFYGTKMLLNADVPDIVEYKLQMDGTERQLTQGVSQLTGPTILSLSDELLQTQRMTIEDLFECSQKCFGTVLVRTCDIEAALGWYYHACTSCASKFTIRDGSIYCGKCREHKTAVPRYKVHLQVIDNSGSATFTLFDRVVSQVLGRSVQDLLADMNQDQVYPPELDTFVDKQMLFKVDVNDANIFRXELDTFVDKQMLFKVDVNDANIFRNYRSYNVKRMTDDVEIINQFINLYALN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1418g00001 459 CDD RPA1_DBD_C 305 414 IPR047192 -
Trme1418g00001 459 Gene3D - 266 410 IPR012340 -
Trme1418g00001 459 Gene3D - 116 254 IPR012340 -
Trme1418g00001 459 SUPERFAMILY Nucleic acid-binding proteins 275 402 IPR012340 -
Trme1418g00001 459 SUPERFAMILY Nucleic acid-binding proteins 121 242 IPR012340 -
Trme1418g00001 459 Gene3D - 5 111 IPR012340 -
Trme1418g00001 459 SUPERFAMILY Nucleic acid-binding proteins 6 112 IPR012340 -
Trme1418g00001 459 Pfam Replication factor-A C terminal domain 306 401 IPR013955 -
Trme1418g00001 459 Pfam Domain of unknown function DUF223 48 136 IPR003871 -
Trme1418g00001 459 CDD RPA1_DBD_A_like 22 109 - -
Trme1418g00001 459 CDD RPA1_DBD_B_like 141 246 - -
Trme1418g00001 459 PANTHER OS03G0429900 PROTEIN 7 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1418g00001 Trme-Chr1418 804 3024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1418g00001 9 373 Core DNA Replication Machinery Family AT5G61000 23.097 1.85e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1418g00001 - - vvo:131638525 538.495