Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme141890g00001 AGTATAGTGCTATCTGAAAGACGATCTAGTCATAGATCTTTATCCTTGAGATCTATAAGTCAAGTGTCATCTGGAGGTGGAGACAGCGGTCGTCACTCATTCACAGCGTCATTTGGTGTGCCGACCACAATAGTTGGCTTCTCAGAAACCGCAGATGGTGGAACTCAAGCTCCTCCTTCGAAAGTTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCCTATTTAAACAAGCCAGAAGTTCCCGCCTTACTTATAGGGACAATAGCTGCAGTGCTGCAAGGTGTAATATTACCGGTTTTCGGCCTCTTGCTTTCGAAAATGATAAGTATTTTCTACGAGCCAGCTGACGAACTTCGTCACGATGCAAAGATTTGGGCGTCAGTATTTGTTGGGCTTGGTGTTGCGTCATTATTCATTTTTCCAACTAGATTCTACTTTTTTGGCATTGCTGGAGGTAAGTTGATCAAAAGAATAAGGAAAATGTGTTTTGAGAAGGTAATTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCAATTGGAGCAAGGC 565 0.4336 SIVLSERRSSHRSLSLRSISQVSSGGGDSGRHSFTASFGVPTTIVGFSETADGGTQAPPSKVSSPPEVPLYRLAYLNKPEVPALLIGTIAAVLQGVILPVFGLLLSKMISIFYEPADELRHDAKIWASVFVGLGVASLFIFPTRFYFFGIAGGKLIKRIRKMCFEKVIHMEVSWFDEAEHSSGAIGAR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme141890g00001 188 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 60 185 IPR039421 -
Trme141890g00001 188 SUPERFAMILY ABC transporter transmembrane region 72 187 IPR036640 GO:0005524|GO:0016020
Trme141890g00001 188 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 85 188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme141890g00001 188 Gene3D ABC transporter type 1, transmembrane domain 49 188 IPR036640 GO:0005524|GO:0016020
Trme141890g00001 188 Pfam ABC transporter transmembrane region 84 186 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme141890g00001 Trme-Chr141890 2 566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme141890g00001 71 188 Calmodulin-binding Proteins AT2G36910 31.933 7.36e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme141890g00001 K05658 - gmx:100800293 263.848