Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14188g00001 GATGATTTTCCACTTTTCCTAGTAGATTCCGCCGTTCCCAAACTGGAAAGACTGCAAATATCGGACAATTTAGCTACATCATCTTGTTCACTTGAAAAAAAGGATAAAACTTCGCCTATCCGGAGACCTGACAATGGTGGCACGTTAGCGGTTCTTACACGCACACTCCGTGTCAATCATTTTCCTGTTAAGTTCAATCCAGATAGTATAATATTTCATTATAATGTTAATGTCAAATCGAAGTTTTCCTCAAAAGTTGGCCAGCCTCGTAAGTTATCTAATGCTGATCTGTCCGTGATTAGAGAGAAATTGTTTTCTGATGATCCTGAGAGGTTTCCCTTGGATATGACTGCACATGACGGTGCAAAAAATATCTTTAGTGCAGTGCAGTTACCAGAAGAGACCATTACTGTGGAGATCTCTGAAGGAGAGGATGAAAAAATCACTTTATATAGTGTTACCCTGACACTTCTTAATAAACTCAGACTTTGCAAGTTAATGGACTATCTTTGTGGGCATTCATTCTCTCTTCCGAGGGATATTTTGCAAGGGATGGATGTGGTGATAAAAGAGAATTCCAATAGGTGCACAATTTCTGTGGGACGATACTTCTATCCCACAAATCCTCCTCTGGTAATGAAGGAACTTCGACCTGGAATAATCGCAGTCGGGGGGTATCATCATAGTTTAAAACCTACATCTCAGGGTCTGTCCTTATGCGTAGACTACTCAGTGGTGCCTTTCCGAAAGCAAATGTCAGTCTTAGATTTCTTGCATGAGCGTATCGATAACTTTAACGTGGGTGAATTTGAAAAATTCAGGAAATATGTTGAGGAGGTGCTTATTGGATTGAAAGTTAGTGTGACGCACCGTAAATCCCAACAGAAATATAGCATTGTAGGATTAACACCTACAGCTACAAGGTATGTCACTTTCCCCATTGACTATGTTAAGGGATGGAAACTTGAAAAGGAAGTCAGTCTTCTTAGCTTTTTCAATGACAAATATGATAAGGACATTGTATACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGAAACAAGAAGAACTATGTACCCATGGAATTTTGTGTTGTAGCTGAGGGCCAAAGATATCCCAAGGAGCGTTTGGATGGTGTTTCTGCAAAGACATTGGAAGCAATGGCACTAGCTCACCCAAGCGAGAGGCAAGGTGCTATACAGAAGATGGTGCAATCGAGTGATGGACCTTGCGGGTAA 1239 0.4052 DDFPLFLVDSAVPKLERLQISDNLATSSCSLEKKDKTSPIRRPDNGGTLAVLTRTLRVNHFPVKFNPDSIIFHYNVNVKSKFSSKVGQPRKLSNADLSVIREKLFSDDPERFPLDMTAHDGAKNIFSAVQLPEETITVEISEGEDEKITLYSVTLTLLNKLRLCKLMDYLCGHSFSLPRDILQGMDVVIKENSNRCTISVGRYFYPTNPPLVMKELRPGIIAVGGYHHSLKPTSQGLSLCVDYSVVPFRKQMSVLDFLHERIDNFNVGEFEKFRKYVEEVLIGLKVSVTHRKSQQKYSIVGLTPTATRYVTFPIDYVKGWKLEKEVSLLSFFNDKYDKDIVYKDIPCLDLGKGNKKNYVPMEFCVVAEGQRYPKERLDGVSAKTLEAMALAHPSERQGAIQKMVQSSDGPCG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14188g00001 412 Pfam Argonaute linker 1 domain 199 250 IPR014811 -
Trme14188g00001 412 Gene3D paz domain 247 372 - -
Trme14188g00001 412 SMART DUF1785_2 198 251 IPR014811 -
Trme14188g00001 412 MobiDBLite consensus disorder prediction 393 412 - -
Trme14188g00001 412 CDD PAZ_argonaute_like 252 367 - -
Trme14188g00001 412 ProSiteProfiles PAZ domain profile. 252 368 IPR003100 GO:0005515
Trme14188g00001 412 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 55 406 - -
Trme14188g00001 412 Pfam PAZ domain 260 380 IPR003100 GO:0005515
Trme14188g00001 412 FunFam Protein argonaute 7 246 372 - -
Trme14188g00001 412 SUPERFAMILY PAZ domain 247 406 IPR036085 GO:0005515
Trme14188g00001 412 Pfam N-terminal domain of argonaute 55 189 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14188g00001 Trme-Chr14188 201 1439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14188g00001 56 408 Eukaryotic Initiation Factors Gene Family AT1G48410 29.348 1.22e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14188g00001 K11593 - gmx:100783571 624.394