Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14178g00001 AATGCAGAAATGAAATCTCAAGCAGATTCTGATCAGAGGAAGAGGATAGGAGGAGGAGACAGTTTCTTACACGGTCCTGCCCGGTACAGAAGATACACTATTGAAGAAATCGAAGAAGCAACAAACTACTTTTCCAACTCATTGAAAATTGGAGAAGGAGGTTATGGACCAGTCTATAGGGCTGAACTAGATCACACTCCAGTTGCTATAAAAGTGTTAAAACCTGATGCAGCTCAAGGACGATCGCAGTTTCAACAAGAAGTTGAAGTGCTGAGTAGCATAAGGCATCCAAACATGGTTCTCCTCCTTGGAGCATGTCCAGAGTTCGGTTGCCTAGTGTATGAGCACATGACCAATGGAAGCTTGGATGATTGCCTCTTCAGGAGAAATAATAAAATGCCAGTTCTACCATGGCAACTACGATTCCGAATCGCTGCAGAGATTGCCACCGGTCTCCTTTTCCTTCACCAGACAAAACCAGAACCATTGGTGCACCGTGACTTAAAACCTGGAAATATTTTGCTCGACCGGAACTATGTGAGCAAGATCAGTGATGTTGGGTTGGCAAGGCTTGTCCCTCCTTCGGTTGCAGACACCGTGACACAGTATCGCATGACAGCAACTGCTGGAACTTTCTGTTACATTGATCCGGAGTACCAACAAACAGGCATGCTCGGAACAAAGTCTGATATTTACTCACTTGGGATCATGCTTCTACAAGTGATAACAGCAAAACCACCAATGGGTTTGAGTCACCATGTTTCAAGATCTATTGAGAAAGGTACTTTTCGTGAGATGCTTGACCCTGCTGTTGAGGATTGGCCAGTTGAACATGCAATGCATTTTGCCAAGCTTGCTCTTCAGTGTGCTGAAATGAGAAGAAAAGACAGACCTGATCTTGGGAAAGTTATTTTGCCTGAGCTTAACAAACTCAGAGATTTTGCTGATGATAACATGCCTATGATGATGATGATGTTTGGTGCAAGAAATAACAACGTTTACTCACGAACCGGGTTTTCCTCATCAAATCAAGACACAATGAGTGAATCCCAATCAATGTCTGGAATGTCAGGATATGAAAGCAACTCAAACTCAA 1096 0.4343 NAEMKSQADSDQRKRIGGGDSFLHGPARYRRYTIEEIEEATNYFSNSLKIGEGGYGPVYRAELDHTPVAIKVLKPDAAQGRSQFQQEVEVLSSIRHPNMVLLLGACPEFGCLVYEHMTNGSLDDCLFRRNNKMPVLPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTATAGTFCYIDPEYQQTGMLGTKSDIYSLGIMLLQVITAKPPMGLSHHVSRSIEKGTFREMLDPAVEDWPVEHAMHFAKLALQCAEMRRKDRPDLGKVILPELNKLRDFADDNMPMMMMMFGARNNNVYSRTGFSSSNQDTMSESQSMSGMSGYESNSNS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14178g00001 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Trme14178g00001 365 SUPERFAMILY Protein kinase-like (PK-like) 25 303 IPR011009 -
Trme14178g00001 365 MobiDBLite consensus disorder prediction 1 18 - -
Trme14178g00001 365 FunFam U-box domain-containing protein 51 117 318 - -
Trme14178g00001 365 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14178g00001 365 Pfam Protein kinase domain 47 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14178g00001 365 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 21 116 - -
Trme14178g00001 365 MobiDBLite consensus disorder prediction 337 365 - -
Trme14178g00001 365 ProSiteProfiles Protein kinase domain profile. 44 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14178g00001 365 Gene3D Transferase(Phosphotransferase) domain 1 117 326 - -
Trme14178g00001 365 MobiDBLite consensus disorder prediction 1 22 - -
Trme14178g00001 365 PANTHER OS02G0152300 PROTEIN 1 341 - -
Trme14178g00001 365 Gene3D Phosphorylase Kinase; domain 1 25 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14178g00001 Trme-Chr14178 64 1533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14178g00001 2 320 Receptor kinase-like Gene Family AT5G12000 72.414 7.11e-172 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme14178g00001 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14178g00001 - - mtr:11428996 630.172