Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14159g00001 GGAAGGGATCGGTCTAGGAGGGATTATCCTTCAAGATATGAAGACAATAAGGGTAATGGTGGTACGGGGCGCGGTGGTGGTGGTAGTAGCAGTGGTAACAGTGGCAATCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCACACAACATTGTAGAGGATGAACTTGCTCATCCTTTTATACGATTTGGACCGCTTGAAAAAGTTGCATTTCAGCCCGGTCGAAGCTATGCTTTCATCAACTTTGAAGTGGATGAAGATGCCATTGATGCTATGCGATCGCTGCAAGGTTTTCCTCTTGCTGGCAACCCGCTTAGAATCGAGTTTGCAAAGGCG 336 0.4792 GRDRSRRDYPSRYEDNKGNGGTGRGGGGSSSGNSGNPPSRHLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKA 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14159g00001 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 112 IPR000504 GO:0003723
Trme14159g00001 112 SUPERFAMILY RNA-binding domain, RBD 26 111 IPR035979 GO:0003676
Trme14159g00001 112 Gene3D - 28 112 IPR012677 -
Trme14159g00001 112 SMART rrm1_1 41 108 IPR000504 GO:0003723
Trme14159g00001 112 PANTHER RNA RECOGNITION MOTIF-CONTAINING 21 110 - -
Trme14159g00001 112 MobiDBLite consensus disorder prediction 23 41 - -
Trme14159g00001 112 MobiDBLite consensus disorder prediction 1 41 - -
Trme14159g00001 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 105 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14159g00001 27 110 Eukaryotic Initiation Factors Gene Family AT4G34110 27.778 2.82e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14159g00001 - - vvo:131661720 185.652