Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14156g00001 ATGCAAATCTTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAGGTAGAGAGCTCAGACACAATTGATAATGTGAAGGCTAAGATACATGACAAAGAGGGTATCCCTCCAGACCAACAGAGGCTCATTTTTGCTGGAAAGCAACTTGAAGATGGCCGTACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGGAAGACGATTACTTTGGAGGTAGAAAGTTCTGATACTATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGCCTTCGTGGTGGATTTTGA 462 0.4481 MQIFVKTLTGKTITLEVESSDTIDNVKAKIHDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14156g00001 153 SUPERFAMILY Ubiquitin-like 75 152 IPR029071 -
Trme14156g00001 153 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Trme14156g00001 153 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trme14156g00001 153 FunFam Polyubiquitin 3 1 76 - -
Trme14156g00001 153 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trme14156g00001 153 PANTHER UBIQUITIN 1 78 - -
Trme14156g00001 153 PRINTS Ubiquitin signature 87 107 IPR019956 -
Trme14156g00001 153 PRINTS Ubiquitin signature 108 128 IPR019956 -
Trme14156g00001 153 PRINTS Ubiquitin signature 129 150 IPR019956 -
Trme14156g00001 153 FunFam Polyubiquitin 3 77 152 - -
Trme14156g00001 153 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Trme14156g00001 153 CDD Ubl_ubiquitin 1 76 - -
Trme14156g00001 153 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trme14156g00001 153 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Trme14156g00001 153 Gene3D - 1 76 - -
Trme14156g00001 153 Gene3D - 77 153 - -
Trme14156g00001 153 CDD Ubl_ubiquitin 77 152 - -
Trme14156g00001 153 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Trme14156g00001 153 SMART ubq_7 1 72 IPR000626 GO:0005515
Trme14156g00001 153 SMART ubq_7 77 148 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14156g00001 Trme-Chr14156 980 1441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14156g00001 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 9.22e-50 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14156g00001 K08770 - sspl:121804617 296.975