LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme14151g00001	ATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTAGTCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGTATGAGAGTTGGTACCATGATAAAGCCTCTCGTTGATTACTTGGTTAATTTGGGGTTACCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATATACTTGGTTATGATCTTGAAGAGACTGTGAAACCAAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTCTTCCGTCGGTTATTGCTCAGTATCCACAGATTATCGGGCTGCCTCTTAAGGCTAAATTGTCTTCGCAACAATATTTTTTCAGTTTGAAGCTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCACCAAAATGTGATTATGAAACCAGTTGAGTTTTTACTTGGTAGGACAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGCCCTCAGTTGGTTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTTTTTCTTCTTCAAAAGTGAGATGGGAAGACCTATAAAAGAGCTTGTGGAGTTCCCTGAATACTTTACTTATAGTTTGGAATCAAGGATTAAACCTAGATACCAGAGGCTCAAGAGCAAGGGAATAAAATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCAATTATATTGAAACCGAAAGTATAGGTCCTTCATTCTGTATTGGTGGGAAATTAGAGTTACCTGGGAATGACATAGTATCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACTGTTTCTCTTTAG	876	0.395	MSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRTIPSQDVASMVIKCPQLVALRVELMKNSFFFFKSEMGRPIKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFCIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL	291

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme14151g00001	291	SMART	mt_12	55	86	IPR003690	GO:0003690\|GO:0006355
	Trme14151g00001	291	SMART	mt_12	91	123	IPR003690	GO:0003690\|GO:0006355
	Trme14151g00001	291	SMART	mt_12	163	194	IPR003690	GO:0003690\|GO:0006355
	Trme14151g00001	291	SMART	mt_12	195	226	IPR003690	GO:0003690\|GO:0006355
	Trme14151g00001	291	SMART	mt_12	128	158	IPR003690	GO:0003690\|GO:0006355
	Trme14151g00001	291	SMART	mt_12	19	50	IPR003690	GO:0003690\|GO:0006355
	Trme14151g00001	291	PANTHER	CGI-12 PROTEIN-RELATED	4	245	IPR003690	GO:0003690\|GO:0006355
	Trme14151g00001	291	Gene3D	Transcription termination factor 3, mitochondrial	1	251	IPR038538	-
	Trme14151g00001	291	FunFam	Transcription termination factor MTERF4, chloroplastic	33	249	-	-
	Trme14151g00001	291	Pfam	mTERF	1	241	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme14151g00001	Trme-Chr14151	471	1346	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Trme14151g00001		mTERF	7.5e-83	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme14151g00001	K15031		-	gmx:100809590	528.865