Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme141432g00001 AAGATGTTTATCCCAAATGTGCGTTCTGGTAGCTATGCCGATATTGGTCCACGGGGATCTATGGATGATGAACACATTCAGATAGATGATCTAGCTTGTCACCTTGGATTTGTGTTCAAGTATCCGATACCAAGTGCGTTTTATGCGGTTTTTGATGGGCATGGTGGGTCTGAAGCGGCTTCCTTTGTTAAGAGGAATGCTATGAGATTATTTTTTGAAGATGCTGATATGCTACAATCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANTTACTGCCCTTGTACTTGGAAGACATTTGCTTGTTGCTAATGCCGGTGACTGTCGAGCAGTTCTTTGCAGGAGAGGTGCAGCTGTTGAGATGTCTCAAGATCACAAACCAAGTTATTTACCTGAACGAAGGAGAGTGGAGGAGATAGGCGGCTACATTGATGATGGGTATCTTAACGGTTATCTCTCGGTAACTCGTGCCCTTGGG 567 0.3492 KMFIPNVRSGSYADIGPRGSMDDEHIQIDDLACHLGFVFKYPIPSAFYAVFDGHGGSEAASFVKRNAMRLFFEDADMLQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALVLGRHLLVANAGDCRAVLCRRGAAVEMSQDHKPSYLPERRRVEEIGGYIDDGYLNGYLSVTRALG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme141432g00001 189 Coils Coil 78 80 - -
Trme141432g00001 189 ProSiteProfiles PPM-type phosphatase domain profile. 8 189 IPR001932 -
Trme141432g00001 189 Pfam Protein phosphatase 2C 18 189 IPR001932 -
Trme141432g00001 189 Gene3D - 5 189 IPR036457 -
Trme141432g00001 189 SUPERFAMILY PP2C-like 3 189 IPR036457 -
Trme141432g00001 189 PANTHER PROTEIN PHOSPHATASE 2C 12 189 IPR015655 GO:0004722|GO:0006470
Trme141432g00001 189 ProSitePatterns PPM-type phosphatase domain signature. 47 55 IPR000222 GO:0043169
Trme141432g00001 189 SMART PP2C_4 4 189 IPR001932 -
Trme141432g00001 189 CDD PP2Cc 7 189 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme141432g00001 Trme-Chr141432 1 567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme141432g00001 3 189 PP2C-type Phosphatase Gene Family AT1G48040 52.128 3.30e-60 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme141432g00001 K14803 - gmx:100798957 258.07