Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme141215g00001 TATATTCTCGAAACCGGTCGTGTTGATGTTAACCGAGCGTGTGGTTCGGATGGTGCTACTGCTCTTCATTGTGCTGTTTTTGGTTGTTCTGCTGCTTCTGTTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTTCTGTTGATGCGAACGGTAACCGGTGTATTGACTTGATTGTTTCGGTTTCTAATAGTATCTTCGGTTCAAGGAAGAGGATACTAGCCATACTAGAAGGTGAAGATGATGTTGATTATGACGGCGATGATTGCCTTAAGGAAGCAGRTTTCCAAATKRGGAAGCTGCAACAAGATTCWGRTTCACMTCRAATCGAGAAGAARGATTATCCGATCGATCCATCTCTACCGGACATAAAGAATGYGATATATAGTACAGATGAATTTAGGATGTATACATTCAAAGTCAAGCCTTGTTCAMGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGCTCATCCTGGGGAAAACGCAAAGCGCCGTGATCTGAGGAAATATCATTACACCTGTGTCCCTTGTCCCGAATTTCGGAAGGGATCATGC 567 0.4268 YILETGRVDVNRACGSDGATALHCAVFGCSAASVEVIKLLLDASADVSSVDANGNRCIDLIVSVSNSIFGSRKRILAILEGEDDVDYDGDDCLKEAXFQXXKLQQDSXSXXIEKKDYPIDPSLPDIKNXIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDLRKYHYTCVPCPEFRKGSC 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme141215g00001 189 ProSiteProfiles Ankyrin repeat region circular profile. 17 51 - -
Trme141215g00001 189 ProSiteProfiles Ankyrin repeat profile. 17 52 IPR002110 GO:0005515
Trme141215g00001 189 Gene3D - 1 79 IPR036770 -
Trme141215g00001 189 SUPERFAMILY Ankyrin repeat 8 59 IPR036770 -
Trme141215g00001 189 PANTHER UNKEMPT FAMILY MEMBER 6 189 IPR045234 -
Trme141215g00001 189 Pfam Ankyrin repeat 17 51 IPR002110 GO:0005515
Trme141215g00001 189 SMART ANK_2a 17 49 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme141215g00001 Trme-Chr141215 2 568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme141215g00001 1 189 C2H2 Transcription Factor Family AT5G12850 48.341 3.14e-61 200