Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1408g00001 ATGAATAACGTAATTGTTACCACAGTTATCATCCTTGTTGTTCTATATTACTTGCTCAAAACACTTTACTCAATTTTCTGGGTCCCATACAAAATCCAACGACACTTCCAAAGCCAAGGTATATCCGGTCCTACCTACCGTCCGATCTTTGGAAACTCATCACAGATCAAACGGTTCCACGCAGAAACTAAATCAGAGCCAAATCAATTCGACCACGACATCTTAAAACGTGTGGTTCCATTCTACCAAAGGTGGTCTTGCATGTATGGGAAAACTTTTCTTTACTGGTTCGGGTCAACGCCCCGGTTGGCTATATCCGACCCGGAAATGATCAAGGAAGTGTTGGTTACTAAGTGTGGAGAGTATGGGAGGATTCCCTACAACCCACAAGCCAAGTTGCTTTATGGACAAGGACTTCCAGGGTTGCAAGGTGATCAATGGAATTTTCATAGAAGGATCATTAATTTGGCATTTAACATGGAGCTTGTTAAGGGATGGGTGCCAGATATTGTGGCAAGTGTGACAAAGATGCTGGAAAAATGGGAAAATGAAAGAGGAGGAAGAAATGAATTTGAAATAGACGTGTACAGAGAGCTTCACGATCTTTCTGCAGATGTTATATCAAGGACTGCTTTTGGAAGCAGTTATGAAGAAGGCAAGCATATATTCAAATTACAGGAGCAGCAAATGCATCTTTTCTCGCAGGCAGTTAGAAGTGTCTATATTCCTGGATTTAGATATTTGCCAACTAAGAAGAATAGGGATAGATGGAGACTAGATAAAGAGACGCGTGAATCAATTCGCAAGCTGATCGAGGCCAAGAGCAATGTTAGAGACAATAACAAAACTGTACTAAATTCATTAATGGGTTCCTACAAGAATGAAGTTGGTGGAGACGACAAATTAGGGTTGGAAGAAATTATAGATGAATGTAAAACCATCTACTTTACTGGAAAGGATACAACAGCTAACTTGTTGACTTGGGCACTTCTTCTTTTAGCAAAACATCAAGAATGGCAAAGTAAGGCGCGCAAAGAAGTTCTCCGTGTTATTGGACACAATCGACTTCCAGTTGCAAACAATTTAAGTGACCTCAAGATTGTCAGTATGATCATTAATGAAACACTTCGGCTTTATCCTCAAGCTGCGATGCTAATGAGGCAAACCGCTAAAAATGTGATGCTAGGGAGCATTGAAGTTCCTGCGAAGACTCAGCTCTCCTTGGCTTTGACTGCTGTTCATCATGACAGTGAAATCTGGGGAGAAGATTGTCACGAGTTTAAACCATCAAGATTTAGCCAGCCTCGGAAGCATTTAGCATCATTCTTTCCTTTTGGATTAGGGCCTCGCAACTGTGTTGGGCAAAATTTGGCATTGGTTGAGGCAAAAGTCGCTCTAGCTTTGATTATTCAAAGTTATAGTTTTGTAGTATCTCCAAGCTATATACATGCTCCTATACAACTTATAACTTTGCAGCCTCAACATGGTGCACAAATCATCTTCAGAAAGATTTCAGGTTGA 1521 0.407 MNNVIVTTVIILVVLYYLLKTLYSIFWVPYKIQRHFQSQGISGPTYRPIFGNSSQIKRFHAETKSEPNQFDHDILKRVVPFYQRWSCMYGKTFLYWFGSTPRLAISDPEMIKEVLVTKCGEYGRIPYNPQAKLLYGQGLPGLQGDQWNFHRRIINLAFNMELVKGWVPDIVASVTKMLEKWENERGGRNEFEIDVYRELHDLSADVISRTAFGSSYEEGKHIFKLQEQQMHLFSQAVRSVYIPGFRYLPTKKNRDRWRLDKETRESIRKLIEAKSNVRDNNKTVLNSLMGSYKNEVGGDDKLGLEEIIDECKTIYFTGKDTTANLLTWALLLLAKHQEWQSKARKEVLRVIGHNRLPVANNLSDLKIVSMIINETLRLYPQAAMLMRQTAKNVMLGSIEVPAKTQLSLALTAVHHDSEIWGEDCHEFKPSRFSQPRKHLASFFPFGLGPRNCVGQNLALVEAKVALALIIQSYSFVVSPSYIHAPIQLITLQPQHGAQIIFRKISG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1408g00001 506 SUPERFAMILY Cytochrome P450 43 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 110 131 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 86 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 Pfam Cytochrome P450 81 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 Coils Coil 503 506 - -
Trme1408g00001 506 Gene3D Cytochrome P450 25 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trme1408g00001 506 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme1408g00001 506 PANTHER CYTOCHROME P450 FAMILY MEMBER 17 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1408g00001 Trme-Chr1408 230 3072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1408g00001 23 505 Cytochrome P450 AT1G75130 54.527 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1408g00001 - - mtr:11418505 853.203