Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140887g00001 ATGGGGCGCATGCACAGTCGCGGTAAGGGTATTTCAAGTTCAGCTCTTCCTTATAAGAGAACACCAACTTGGATTAACATCTCCACTCAAGATATTGATGACACAATCTGCAAGTTTGCCAAAAAAGGTTTAACACCATCTCAAATCGGTGTTATTCTTCGTGATTCTCATGGAATTTCTCAGGTTAAGAATGTAACCGGAAGCAAGATTTTGCGTATATTGAAGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGAAGGATAAGGATTCTAAATTTAGGTTGATTTTGGTTGAGAGTAGGATTCATCGTCTTGCTCGTTATTATAAGAAGACAAAGAAGCTTCCACCAGTATGGAAATATGAATCTACTACTGCTAGCACTCTTGTTGCTTAA 453 0.3091 MGRMHSRGKGISSSALPYKRTPTWINISTQDIDDTICKFAKKGLTPSQIGVILRDSHGISQVKNVTGSKILRILKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140887g00001 150 Coils Coil 71 75 - -
Trme140887g00001 150 SUPERFAMILY S15/NS1 RNA-binding domain 105 141 IPR009068 -
Trme140887g00001 150 FunFam 40S ribosomal protein S13 102 150 - -
Trme140887g00001 150 Pfam Ribosomal S13/S15 N-terminal domain 1 59 IPR012606 GO:0003735|GO:0005840|GO:0006412
Trme140887g00001 150 Coils Coil 106 108 - -
Trme140887g00001 150 Gene3D - 91 150 - -
Trme140887g00001 150 SMART Ribosomal_S13_N_2 1 59 IPR012606 GO:0003735|GO:0005840|GO:0006412
Trme140887g00001 150 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 150 IPR023029 -
Trme140887g00001 150 Gene3D - 34 79 - -
Trme140887g00001 150 FunFam 40S ribosomal protein S13 34 79 - -
Trme140887g00001 150 CDD Ribosomal_S15p_S13e 106 142 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140887g00001 Trme-Chr140887 91 543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140887g00001 1 150 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 70.861 5.03e-71 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140887g00001 K02953 - ini:109155585 211.075