Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140858g00001 ATGACTATGAATCTGGACTATGAATATGGACCTTCGACCTTAACTGGAGGAGGAGGCGTTGGATTCATATATGACTATGAATATGGACCTTCGACCTTAACTGGAGAGGAGATGTCTCACATTATTGAGCGAGTGATGGAGACTACAGAGAACCTAAATGATCGGTATATTATTGGCAGAGGAGCACATGGTGTCGTGTACAAAGCTGTGATTGGTCAACTGGTTTGTGCTGTAAAGAAGGTTGAATTTGAATGGAACAAGAAAAAGCGTATAAATATCATGCGCAACGAAATTGAAGTCCTAGAGAAGTTTAAGCATCGAAATTTGATCAAATGCTATGGCTGCTGGATTGGAAATGACTATGCTCTAATCTTATCTTGGAATGTTCGGGACAATAACT 400 0.4 MTMNLDYEYGPSTLTGGGGVGFIYDYEYGPSTLTGEEMSHIIERVMETTENLNDRYIIGRGAHGVVYKAVIGQLVCAVKKVEFEWNKKKRINIMRNEIEVLEKFKHRNLIKCYGCWIGNDYALILSWNVRDNN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140858g00001 133 Gene3D Phosphorylase Kinase; domain 1 30 126 - -
Trme140858g00001 133 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Trme140858g00001 133 Pfam Protein kinase domain 57 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme140858g00001 133 ProSiteProfiles Protein kinase domain profile. 52 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme140858g00001 133 PANTHER LEUCINE RICH REPEAT KINASE 2 43 116 - -
Trme140858g00001 133 SUPERFAMILY Protein kinase-like (PK-like) 38 122 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140858g00001 Trme-Chr140858 170 569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140858g00001 21 125 Receptor kinase-like Gene Family AT1G73080 40.566 4.23e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme140858g00001 Pkinase 2.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140858g00001 - - tpra:123922290 134.42