Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme140812g00001 | ATGGATTCAATCAGAATGTCCATGGATTCACTAACCACCATGTCATCAACTCTTTCCCGCGACGATGAACCATCAAACGTCGCGGGATCAGAGGACGTGATGACGTGGCTCAGTGCCGCGTTAACTAACCAAGACACATGTATGGAAGGATTTGAAGACATTAGCGGCACCGTTAAGGATCAGATGGTGAATAATTTGAAGGATTTATCGGAACTAGTGAGTAATTCTCTCGCGATATTTTCAGGGAGTGGAGATTTTGATCTTACTGGAGTGCCGATACAGAACAAGAGACGGTTATTGGGAATTGAGAAAGGAGATAATGATGATGTTGTCGGCGATATCTCGCGAGAATTTCCGAAATGGCTTAGGAAACGAGATAGGAGATTGTTGAGTTTACCGGTATCGGAGATTCAAGCTGATGTTATCGTTTCGAAGAGTGGTAACGGAACGGTGAAGACAATTACTGAAGCGATTAAGAGAGCACCGGATCATAGTAGCCGTCGGTTCATAATCTATGTGAGGGCAGGAAGGTAA | 534 | 0.4438 | MDSIRMSMDSLTTMSSTLSRDDEPSNVAGSEDVMTWLSAALTNQDTCMEGFEDISGTVKDQMVNNLKDLSELVSNSLAIFSGSGDFDLTGVPIQNKRRLLGIEKGDNDDVVGDISREFPKWLRKRDRRLLSLPVSEIQADVIVSKSGNGTVKTITEAIKRAPDHSSRRFIIYVRAGR | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme140812g00001 | 177 | NCBIfam | pectinesterase inhibitor domain | 31 | 80 | IPR006501 | GO:0004857 | |
| Trme140812g00001 | 177 | Pfam | Pectinesterase | 140 | 176 | IPR000070 | GO:0030599|GO:0042545 | |
| Trme140812g00001 | 177 | SUPERFAMILY | Pectin lyase-like | 137 | 176 | IPR011050 | - | |
| Trme140812g00001 | 177 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Trme140812g00001 | 177 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 8 | 81 | IPR035513 | - | |
| Trme140812g00001 | 177 | Pfam | Plant invertase/pectin methylesterase inhibitor | 7 | 79 | IPR006501 | GO:0004857 | |
| Trme140812g00001 | 177 | Gene3D | - | 134 | 177 | IPR012334 | - | |
| Trme140812g00001 | 177 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 82 | IPR035513 | - | |
| Trme140812g00001 | 177 | PANTHER | PECTINESTERASE | 7 | 176 | - | - | |
| Trme140812g00001 | 177 | CDD | PMEI-like_3 | 1 | 81 | - | - | |
| Trme140812g00001 | 177 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme140812g00001 | Trme-Chr140812 | 7 | 540 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme140812g00001 | 28 | 177 | Carbohydrate Esterase | AT3G49220 | 59.868 | 1.12e-53 | 178 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme140812g00001 | - | - | gmx:106796002 | 224.942 |