Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140606g00001 TGCTGGCCCGGTGGATTGTGCCTTTCTAGATCGATAGGCGACACAGATGTGGGAGAATATATCGTTCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGCGGAAGGCTTATCATAGCTTCTGATGGTATTTGGGATACTGTGTCTTCTGATATGGCTGCCAAGTCGTGTCGTGGTGTACCTGCAGAACTTGCTGCAAAGCTGGTGGTTAAGGAAGCTCTAAGGTCAAGGGGGCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCAGACTATCCTATGTCGCCAATGGCAACAACTCCTAGAAAGAAACAGAATATGCTAAGTTCACTTCTCTTTGGAAAGAAATCTCCAAA 371 0.4474 CWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTVSSDMAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPMSPMATTPRKKQNMLSSLLFGKKSP 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140606g00001 123 ProSiteProfiles PPM-type phosphatase domain profile. 1 92 IPR001932 -
Trme140606g00001 123 CDD PP2Cc 2 92 IPR001932 -
Trme140606g00001 123 PANTHER PROTEIN PHOSPHATASE 2 91 IPR015655 GO:0004722|GO:0006470
Trme140606g00001 123 Gene3D - 1 94 IPR036457 -
Trme140606g00001 123 Pfam Protein phosphatase 2C 6 77 IPR001932 -
Trme140606g00001 123 SUPERFAMILY PP2C-like 4 92 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140606g00001 Trme-Chr140606 1 569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140606g00001 1 122 PP2C-type Phosphatase Gene Family AT1G68410 72.951 3.38e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140606g00001 - - lja:Lj0g3v0114849.2 223.402