Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14050g00001 ATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCACATTGATAGTACTGCTGGTTTTCCTTCTAGGCTTATGGGGGTTAAGGCCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGTAAAGATATTGATAAAATAATTGCTTCAGTTCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGACGGGGTGCATCAAGTCTGTAAAATTGCTTTGAAAAAGGATTTTGAATTTATTAATACAGTTCAGGAGGGTACTGAGGAGACACATGCAAAGTCTGTCTCCATCCTGGATGAGAAAGTGTTTCCTGTAAAGTTTAGGGATGAACACAGAGGAAAGATGATAGGCAAATGCACAATGGGATGGGGAAAGGAAATGATAGCTCAAAATATTATAAATGGGTCAGAACTTTGGAAGTGGCGTTGCAATCGGAAAGGTTGTGGTCTGAGTGGCGATTGCTGGAGCTTAGGTGGCTGTCTGGCTTCTCCCGAGTCCTGA 516 0.4225 ILVATPGRLRDHIDSTAGFPSRLMGVKALVLDEADHLLDMGFRKDIDKIIASVPKQRQTLMFSATIPDGVHQVCKIALKKDFEFINTVQEGTEETHAKSVSILDEKVFPVKFRDEHRGKMIGKCTMGWGKEMIAQNIINGSELWKWRCNRKGCGLSGDCWSLGGCLASPES 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14050g00001 171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 80 IPR027417 -
Trme14050g00001 171 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 93 - -
Trme14050g00001 171 Gene3D - 1 85 IPR027417 -
Trme14050g00001 171 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 84 IPR014001 -
Trme14050g00001 171 Pfam DEAD/DEAH box helicase 1 71 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14050g00001 Trme-Chr14050 201 1520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14050g00001 1 80 Eukaryotic Initiation Factors Gene Family AT3G13920 33.750 1.75e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14050g00001 - - adu:107463398 169.088