Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14044g00001 ATGAATCAGAACCTTCTAAACACAACTCCTAGTTTGAATGAAACTAATCATTCTAGAGGCCAGTCCATTGATCTTGGACGAGGAAATGTTGCTACAAGTTCTGCTAGAAACTCAGATTTTGACCGTGGTCTGAGTCGAGCCTCTAGTTTCAGAAGCATTGTTTCAGATACTGATACTTGGGTTTATGATCAAAATTCTTTAAAGGATGCGCCACTAGCTTCTAAACTTGCGTCACCTAATAGACAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGTCCAAGGAATGCATGCAGTAGCTCAAACTGAGAACATTGATGCATCGCGAAAGCTAAGTGAACTGAGCAAGAGGAGATCCGGAGAATCCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGGTGGCTCAAGAATTAGCACGACAAGAAATMGAGAAATATGAAGCTGCAGCAAGAGAAGCTGCATATTTGAAAGAATGTGCTGAAAGAGAAGCTTCAGAAAGAAAAGAAACAGAATTGAAAGCTATTCGTGCTGCCAAAGAGAAAGAAAAGCTAGAGGATGCTCTGAGTGGTTCCACACCTCAGTACCGAAAGTTTATGTGGGATGAAATAGTTTCAGCTACTTCATCTTTCTCTGAAGATCTGAGAATTGGAATGGGTGCATATGGAATGGTGTATAAGTGCACTTTGCATCACACAACTGTTGCTGTTAAAGTTCTCCACTCTGCCGGAATCAGCCAAAGCAAGCAATTCCAGCAAGAGTTGGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGCCTTGTGTATGAATACATGGAAAATGGTAGCTTGGAGGATAGACTATTTCAGAAAAACAGTACCATCCCAATCCCATGGTTTGATAGGTTTCGAATAGCTTGGGAAATTGCATCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCACAACCTATCATCCATCGTGACTTGAAACCTGCAAACATCTTGCTCGGTGGTAACCTTGTCAGCAAGATTGGTGATATTGGTCTTTCTACGATTCTCACTTCAGACGA 1100 0.4118 MNQNLLNTTPSLNETNHSRGQSIDLGRGNVATSSARNSDFDRGLSRASSFRSIVSDTDTWVYDQNSLKDAPLASKLASPNRQENFNLELEKLRIELRHVQGMHAVAQTENIDASRKLSELSKRRSGESMKMKEIIAKEEVAQELARQEIEKYEAAAREAAYLKECAEREASERKETELKAIRAAKEKEKLEDALSGSTPQYRKFMWDEIVSATSSFSEDLRIGMGAYGMVYKCTLHHTTVAVKVLHSAGISQSKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDRLFQKNSTIPIPWFDRFRIAWEIASALSFLHSSKPQPIIHRDLKPANILLGGNLVSKIGDIGLSTILTSD 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14044g00001 366 Gene3D Phosphorylase Kinase; domain 1 194 288 - -
Trme14044g00001 366 SMART serkin_6 216 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14044g00001 366 Coils Coil 135 169 - -
Trme14044g00001 366 PANTHER OS02G0152300 PROTEIN 37 364 - -
Trme14044g00001 366 Pfam Protein tyrosine and serine/threonine kinase 221 363 IPR001245 GO:0004672|GO:0006468
Trme14044g00001 366 SUPERFAMILY Protein kinase-like (PK-like) 198 365 IPR011009 -
Trme14044g00001 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Trme14044g00001 366 MobiDBLite consensus disorder prediction 1 42 - -
Trme14044g00001 366 ProSitePatterns Protein kinases ATP-binding region signature. 222 243 IPR017441 GO:0005524
Trme14044g00001 366 Gene3D Transferase(Phosphotransferase) domain 1 289 366 - -
Trme14044g00001 366 ProSiteProfiles Protein kinase domain profile. 216 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14044g00001 366 Coils Coil 171 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14044g00001 Trme-Chr14044 1 1468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14044g00001 80 366 U-box Gene Family AT4G25160 65.157 6.92e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme14044g00001 PK_Tyr_Ser-Thr 2.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14044g00001 - - gmx:100801699 545.428