Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14028g00001 ATGAATATTAAACTGAAGTCAGAGCTTCTACTGACCGATAATAAGACCATAGATGGACGCGGTGTAAACATTCATATTAGTGGTGGTGCTCAAATAACNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCATGATACTAAACCATGCAGTGGTGGCCTCATCAGAGACTCGTTGAGTCACTTTGGACAACGTTCGACAAGTGATGGTGATGGAATTTCAATGTTTGGAGTTTCTCATGTTTGGATAGATCATATTTCATTGTGGAACTGTGCTGATGGTTTGATTGATGCCGTAGCGGGATCAACAGCTATTACCATTTCCAACTGCCATATGACACATCATAACGACGTTATGTTATTTGGAGCAAGTGATTCATTCCCAGGAGATCAAATTTCGCAAATAACTGTGGCTTTCAACCATTTTGGGAAAGGATTGATACAGAGGATGCCAAGATGCAGATGGGGTTTCTTTCATATTGTTAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCACACATCCCACCATACTCAGCCAGG 562 0.3808 MNIKLKSELLLTDNKTIDGRGVNIHISGGAQITXXXXXXXXXXXXXXHDTKPCSGGLIRDSLSHFGQRSTSDGDGISMFGVSHVWIDHISLWNCADGLIDAVAGSTAITISNCHMTHHNDVMLFGASDSFPGDQISQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSTHPTILSQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14028g00001 187 PANTHER PECTATE LYASE 18-RELATED 1 187 IPR045032 GO:0030570
Trme14028g00001 187 Pfam Pectate lyase 69 186 IPR002022 -
Trme14028g00001 187 SMART amb_all 1 187 IPR002022 -
Trme14028g00001 187 SUPERFAMILY Pectin lyase-like 1 187 IPR011050 -
Trme14028g00001 187 Gene3D - 1 187 IPR012334 -
Trme14028g00001 187 PRINTS Pollen allergen Amb family signature 152 171 IPR018082 -
Trme14028g00001 187 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Trme14028g00001 187 PRINTS Pollen allergen Amb family signature 174 187 IPR018082 -
Trme14028g00001 187 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14028g00001 Trme-Chr14028 11 770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14028g00001 1 187 Polysaccharide Lyase AT5G48900 61.497 5.17e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14028g00001 K01728 - gmx:100801864 287.345