Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14022g00001 ATGTTTCGTAATTGGGACAATGATTATCCTCTTTACTTGGAGAAACGATATCCATATAGTGTATCAAGTGATTATGGAGAACATCTAAACTATTTAGAAAATACCAATCCAAATTACACTGCACCAGATGTTGTATACTTAACTGCAAGAACTTATGGAATGGATGCAAAAGAGAATTATAATGTAACTTGGAATTTTGAAATTGACTCAACTTTTACTTATATGGTAAGGTTACATTTTTGTGAGTTTGGTTACCATATCAAGAATGAAGGTGATAGAGTTTTTCAGATTTTTATAGATGATATTTTGGCCGAACGAAGAGCTGATGTAATTTCTTGGAGTGGTGCTCGTTTGGTTCCTGTTTATAGGGATTATGCAGTGACTATGTACTCTAAAGAAGGAAGCTCTCAAATTAAAAGAGTTAATCTTTCGATCAAGCTACAAAGAGTGCCAGAAAATATCTACACAAAATACCATGATGTCATACTGAATGGAATAGAGATTTTGAAAGTAAGTGATAAAAGTTACAATCTTGCAGGATTAAATCCGGAATATTTATATCCAAATATTCAATTATTTCCAAGTCAACAAAAGTCAAAGTTGTCTATCATAGTCATTGTTGTTTTGGTTGAAGTTTCATTTTTCTTGCTCGAATTTGTTGTTGTGGGAATAATAGTTTTGGTTAGAAGGAGAAGAAGATTTAAATTTCCATGGAAAACAAAGAAAGATCGTTCTTCAACTTTACCATCCCATTTGTGCCGCTACTTTACAATTGCGGAGATCAGAGCTGCCACAAACAACTTCGATGATGATTTCATCATCGGTGTTGGAGGGTTTGGCAACGTGTACAAAGGTTGCATCGATGGATCCACACCCGTTGCAATAAAACGCCTTAAATCGGGCTCTCAACAAGGTGCCAACGAGTTTATGAACGAGATTGAGTTGCTCTCCCAACTTCGCCATATTCACTTGGTATCCCTTGTGGGATATTGCAACGACAACACAGAGATGATTCTGCTTTATGAGTTCATGCATCACGGTACTCTATCCGAGTATCTTTATGGTTCTGATAACCAGCCCCTACCATGGAAGCAAAGGCTTGAGATTCTATTGGGTGCAGCGAAAGGGATACGTTATCTTCATGATGAGGTGAAGCACAAGATAATACACCGTGACATAAAGAGCACCAACATATTGTTGGATGAGAAATGGGTGGCTAAAGTTTCTGACTTCGGGTTATCCAAAGTGGGGCCCACAGGAATATCGAAGACCCATGTCAGNNNNNNNNNNTNNNNNNNNNNTGGATATTTAGATCCCGAGTACTATATGTTCCAAAGGCTTACTCTAAAATCTGATGTGTACTCCTTTGGCGTGGTGCTTCTTGAAGTGTTGTTTGCTAGACCACCTTTAGTTCGAGATTTGGATAAGAAGACAGCTAATCTAGTTGGTTGGTTTCAAAAATGTTGCGATGAAG 1474 0.3718 MFRNWDNDYPLYLEKRYPYSVSSDYGEHLNYLENTNPNYTAPDVVYLTARTYGMDAKENYNVTWNFEIDSTFTYMVRLHFCEFGYHIKNEGDRVFQIFIDDILAERRADVISWSGARLVPVYRDYAVTMYSKEGSSQIKRVNLSIKLQRVPENIYTKYHDVILNGIEILKVSDKSYNLAGLNPEYLYPNIQLFPSQQKSKLSIIVIVVLVEVSFFLLEFVVVGIIVLVRRRRRFKFPWKTKKDRSSTLPSHLCRYFTIAEIRAATNNFDDDFIIGVGGFGNVYKGCIDGSTPVAIKRLKSGSQQGANEFMNEIELLSQLRHIHLVSLVGYCNDNTEMILLYEFMHHGTLSEYLYGSDNQPLPWKQRLEILLGAAKGIRYLHDEVKHKIIHRDIKSTNILLDEKWVAKVSDFGLSKVGPTGISKTHVXXXXXXXXGYLDPEYYMFQRLTLKSDVYSFGVVLLEVLFARPPLVRDLDKKTANLVGWFQKCCDE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14022g00001 491 FunFam Os07g0541700 protein 344 427 - -
Trme14022g00001 491 Gene3D - 2 172 - -
Trme14022g00001 491 Pfam Protein tyrosine and serine/threonine kinase 274 465 IPR001245 GO:0004672|GO:0006468
Trme14022g00001 491 SMART serkin_6 268 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14022g00001 491 FunFam FERONIA receptor-like kinase 1 172 - -
Trme14022g00001 491 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 72 487 - -
Trme14022g00001 491 SUPERFAMILY Protein kinase-like (PK-like) 243 473 IPR011009 -
Trme14022g00001 491 ProSiteProfiles Protein kinase domain profile. 268 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14022g00001 491 Pfam Malectin-like domain 29 171 IPR024788 -
Trme14022g00001 491 Gene3D Transferase(Phosphotransferase) domain 1 344 491 - -
Trme14022g00001 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Trme14022g00001 491 FunFam receptor-like protein kinase FERONIA 234 343 - -
Trme14022g00001 491 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
Trme14022g00001 491 Gene3D Phosphorylase Kinase; domain 1 232 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14022g00001 Trme-Chr14022 8 1481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14022g00001 1 487 Receptor kinase-like Gene Family AT5G39000 47.953 6.14e-143 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme14022g00001 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14022g00001 - - mtr:25497555 685.641