Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140225g00001 ATGGTCACGGCGCAAGGTAGGGTTGATCCTAATCAAAACACTGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAGAACAATTTTCCTACTTATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGTATTAGTGATGTTATTCAACCTGTTGGGTGGCATGAATGGAATG 211 0.3886 MVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPVGWHEWN 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140225g00001 70 PANTHER PECTINESTERASE 1 69 - -
Trme140225g00001 70 Pfam Pectinesterase 1 70 IPR000070 GO:0030599|GO:0042545
Trme140225g00001 70 Gene3D - 1 70 IPR012334 -
Trme140225g00001 70 SUPERFAMILY Pectin lyase-like 2 70 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140225g00001 Trme-Chr140225 71 281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140225g00001 1 69 Carbohydrate Esterase AT3G14310 84.058 1.22e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140225g00001 K01051 - lja:Lj3g3v2574490.1 139.428