Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1401g00001 TCAAACCCAGTTCTTGAAGCATTTGGTAATGCAAAAACAGTTAGAAATGACAATTCTAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTGATAAATTCGGGCGAATATCGGGCGCAGCTATTAGAACTTATCTGCTCGAGAAATCTCGTGTTTGCCAAATATCAGATCCAGAGCGTAATTATCACTGTTTCTACCTTCTCTGTGCTTCTCCTCCAGAGGAAAAGGAGAAATATAAGTTGGGAGATCCAAGATCATTTCATTACCTTAATCAATCCAGTTGCTATGAATTAGCTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACCAAAAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCAATTTTCAGAGTTGTTGCTGCTATTCTCCATCTTGGAAACATTAGATTTGAAAAGTCAGAAGAAACAGATTCATCAGTTCTAGCAGACGAAGACTCCAAGTTCCATCTCCAAACAACAGCTGAACTTATAATGTGTGATCCTAATGCTGTGGAAGTTGCACTTCGTAAGCGTGTGATGATCACCCCAGAAGAAATCATCGAAAGAAGTCTTGATCCTCTTGCCGCAACAGTTAGCAGGGATGGTTTAGCCAAGACATTATATTCTCGTTTGTTTGACTGGTTAGTCCAGAAAATTAATCTCTCCATTGGGCAGGATCCTGACTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACTAATAGTTTTGAGCAGTTTTGTATTAATTTTACGAACGAAAAGCTGCAGCAGCACTTCAACCAGCACGTGTTTAAGATGGAGCAAGAGGAGTACACAAAAGAAGAGATTGATTGGAGCTACTTAGAATTTGTAGATAATCAGGATGTACTAGATCTCATTGAAAAGGTTTCTACAAACTTTTGA 933 0.3901 SNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKFGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSSCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIRFEKSEETDSSVLADEDSKFHLQTTAELIMCDPNAVEVALRKRVMITPEEIIERSLDPLAATVSRDGLAKTLYSRLFDWLVQKINLSIGQDPDSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYLEFVDNQDVLDLIEKVSTNF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1401g00001 310 ProSiteProfiles Myosin motor domain profile. 1 310 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1401g00001 310 Gene3D - 253 309 - -
Trme1401g00001 310 Pfam Myosin head (motor domain) 1 305 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1401g00001 310 FunFam Myosin 2 119 231 - -
Trme1401g00001 310 Gene3D Kinesin motor domain 1 103 IPR036961 -
Trme1401g00001 310 PANTHER MYOSIN 1 305 - -
Trme1401g00001 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 306 IPR027417 -
Trme1401g00001 310 Gene3D Myosin VI head, motor domain, U50 subdomain 119 252 - -
Trme1401g00001 310 PRINTS Myosin heavy chain signature 289 310 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1401g00001 310 PRINTS Myosin heavy chain signature 236 264 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1401g00001 310 PRINTS Myosin heavy chain signature 3 30 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1401g00001 310 SMART MYSc_2a 1 310 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1401g00001 Trme-Chr1401 365 2808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1401g00001 1 305 Myosins gene family AT3G58160 80.000 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1401g00001 K10357 - gmx:100819436 581.252