Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140143g00001 TATATGTTCCTCATATTTTGGCAATGCCTGCAGGAAAGAGAAGCAGCATTGAGATCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGACATTCCTCATGTTGCACATGTAGTTAACTTTGACCTTCCCAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGAGAGCAGGAAAGAAAGGTCTTGCAACCGCATTCTTTAATGAAAACAATTCATCCCTAGCAAGGTCTCTACAAGATTTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTTCGCTGCACGATCATCCTTTGGTGGAGGAAAGAACCGTCGATCAGGAGGCCGATTTGGTGGCCGCGACTTTCGAAGAGATGGTTCTTTTAATAGGGGTGGTTCTGATTACCAAGGTGCAGGAAATAGTAGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGAGGATACGGCGGTGGGTATGCAGGAAATAGCGCCGGTCCTGGGGTGACCAGTGCATGGGACTGA 546 0.478 YMFLIFWQCLQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNSSLARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGRFGGRDFRRDGSFNRGGSDYQGAGNSSGGYGASGGYGGGYGGGYAGNSAGPGVTSAWD 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140143g00001 181 Coils Coil 79 99 - -
Trme140143g00001 181 MobiDBLite consensus disorder prediction 122 136 - -
Trme140143g00001 181 MobiDBLite consensus disorder prediction 113 151 - -
Trme140143g00001 181 SMART helicmild6 1 69 IPR001650 -
Trme140143g00001 181 Pfam Helicase conserved C-terminal domain 11 69 IPR001650 -
Trme140143g00001 181 CDD SF2_C_DEAD 11 78 - -
Trme140143g00001 181 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 108 IPR001650 -
Trme140143g00001 181 Gene3D - 9 112 IPR027417 -
Trme140143g00001 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 121 IPR027417 -
Trme140143g00001 181 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140143g00001 Trme-Chr140143 26 571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140143g00001 11 101 Eukaryotic Initiation Factors Gene Family AT3G19760 40.659 2.00e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140143g00001 K11594 - gmx:100781743 223.016