Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140077g00001 ATGCAAAGGGCGGAGTTTGAAGCTTCACAGTCTCAGCTTGACATTGTTGATAAGTTAAACCATGGAATTAAGGAGCAAAAATTAGATCAAGCTTTTGCGAACGATATGCTTGAGGAGGAAGCAAGGGCAGTTGGGGTTCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGATGGGAAAAAGAAGAAGCTGCCAACAGGAAAGAAAGAGCAGAAGTTATTTTCTTGGAGCAGATCATTTTGCTACTCTCTCAAGCTGACGCTGCAAGGGATTATGAAGAAGTTAAGAAACAATACTTTAAAAGGGTTCAGGTAATAGAGYGATATGGCTCGAGGGAAAAATATATTCCACCGCTTAATTCTTTCCTTTGTTCGATAAGTGGAGCTGTTATGGTAGATCCTGTGAGTCTTTGCACTGGTACTACATGTGAGAGATCTGCCATCGAAGATTGGTTTGATGATGGAAACTTGACTGATCCCAAAACAGAAGAG 501 0.4172 MQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANDMLEEEARAVGVPVEPSEISKEIASIRWEKEEAANRKERAEVIFLEQIILLLSQADAARDYEEVKKQYFKRVQVIEXYGSREKYIPPLNSFLCSISGAVMVDPVSLCTGTTCERSAIEDWFDDGNLTDPKTEE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140077g00001 167 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 166 - -
Trme140077g00001 167 Pfam U-box domain 124 166 IPR003613 GO:0004842|GO:0016567
Trme140077g00001 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 167 IPR013083 -
Trme140077g00001 167 SUPERFAMILY RING/U-box 107 166 - -
Trme140077g00001 167 CDD RING-Ubox_PUB 125 167 IPR045210 -
Trme140077g00001 167 ProSiteProfiles U-box domain profile. 120 167 IPR003613 GO:0004842|GO:0016567
Trme140077g00001 167 SMART Ubox_2 124 167 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140077g00001 Trme-Chr140077 49 549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140077g00001 116 165 U-box Gene Family AT3G18710 52.000 1.57e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140077g00001 - - psat:127083557 298.516