Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14006g00001 ATGAATGCAGCTGGAAATCATCTAAGCTTGGTTCCAACAGCAGAGATCATTAACTTCACAAGCAAACTTCTTTCAGAATCCCAACCTCAACTTCAGAGGAACACCCTGAGGATGCCAGCATTAATATTGGATGAGAAGGAGAAGATGGTTACCAAGTTTATATCTAGTAATGGGCTGGTTGAAGATCCGTTGGCTATTGAGAAAGAAAGGGATATGATCAATCCTTGGACATCAGAAGAAAAAGAAATTTTCTTGGAGAAATTTGCTGCATTTGGAAAAGATTTCCGGAAGATTGCTTCATTCCTTGATCATAAGACAACTGCGGACTGTGTTGAGTTTTACTACAAGAATCACAAATCTGAATGTTTTGAGAAACTGAAGAGGAAAGATGTTGGTAAGCTTGGGAAGTCATTTTCAGCTAAAACTAACTTGATGGCATCAGGTAAAAAATGGAATCATGAAGTTGATGTTTCTTCGCTTGATATTTTGAGTGCAGCTTCATTGATGGCAGATGGCATTGCAGGTAATAAAAGGATGCGGTCAGGAAGATTCCTTTTGGGGGGATATGGTAATGTTAAAGCATCAAGAGCCGAGGACAGCAATATTGAGAGATCAAACAGTTTTGACATTCTTGGGGATGAAAGGGAGACTGCTGCTGCAGCTGATGTATTGGCTGGTATATGTGGTTCACTTTCATCTGAAGCTATGAGTTCCTGCATAACAAGTTCAATTGATCCTGTGGATGGTAACAAGGAAAGGAAGTTCTTGAGAGGGAACCCTCTATGCAAACAACCCTTGGTACGTGATATTTCTCAGAATGCTGACGATGAGACTTGTTCAGATGAGAGCTGTGGTGAAGTGGATGTTTCTGAGTGGACAGATGATGAGAAGACAGCTTTTCTTCAGGCTGTATCATCTTTTGGTAAGGATTTCGCAAAAATAGCACGGTGTGTAGGTACAAGGTCCCGAGAACATTGCAAAGTTTTCTTCAGCAAGACTCGGAAAGTCCTTGGATTGGATCTCTCACACCCCATTCCTGGAATTGTCGAATCCCCGCTGAATGATGATGCAAATGGTGGTGAGAGTGACACAGATGATGCATGTGTTGTTGAGGCAGGCTCAGTGGTTGATGCTGACAAGTCTGGAAATAAAACAGACGAGGACCTGCCTTCTGATGCTTTGAATACATTCCATGACGAATCCAATCCTATGGAAGCTAGGAGCCCGTCAGCTGAATTAAATGAATCAAGAGAAATCAGTGAGACAGAAGTACGTCTTGAAAATTTAGACGTGGCTTCCAATGTTTGTGCAATTAAGGTTGAATCTAAGCTGGGATCTGATGGTAGTGGGGTTGACTTGGGCAAAACC 1368 0.4196 MNAAGNHLSLVPTAEIINFTSKLLSESQPQLQRNTLRMPALILDEKEKMVTKFISSNGLVEDPLAIEKERDMINPWTSEEKEIFLEKFAAFGKDFRKIASFLDHKTTADCVEFYYKNHKSECFEKLKRKDVGKLGKSFSAKTNLMASGKKWNHEVDVSSLDILSAASLMADGIAGNKRMRSGRFLLGGYGNVKASRAEDSNIERSNSFDILGDERETAAAADVLAGICGSLSSEAMSSCITSSIDPVDGNKERKFLRGNPLCKQPLVRDISQNADDETCSDESCGEVDVSEWTDDEKTAFLQAVSSFGKDFAKIARCVGTRSREHCKVFFSKTRKVLGLDLSHPIPGIVESPLNDDANGGESDTDDACVVEAGSVVDADKSGNKTDEDLPSDALNTFHDESNPMEARSPSAELNESREISETEVRLENLDVASNVCAIKVESKLGSDGSGVDLGKT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14006g00001 456 SMART sant 72 120 IPR001005 -
Trme14006g00001 456 SMART sant 288 336 IPR001005 -
Trme14006g00001 456 Gene3D - 52 124 - -
Trme14006g00001 456 ProSiteProfiles SANT domain profile. 287 338 IPR017884 -
Trme14006g00001 456 SUPERFAMILY Homeodomain-like 289 338 IPR009057 -
Trme14006g00001 456 CDD SANT 291 330 IPR001005 -
Trme14006g00001 456 MobiDBLite consensus disorder prediction 380 394 - -
Trme14006g00001 456 Pfam Myb-like DNA-binding domain 291 331 IPR001005 -
Trme14006g00001 456 Pfam Myb-like DNA-binding domain 75 116 IPR001005 -
Trme14006g00001 456 ProSiteProfiles SANT domain profile. 71 122 IPR017884 -
Trme14006g00001 456 MobiDBLite consensus disorder prediction 374 418 - -
Trme14006g00001 456 MobiDBLite consensus disorder prediction 395 410 - -
Trme14006g00001 456 SUPERFAMILY Homeodomain-like 59 120 IPR009057 -
Trme14006g00001 456 Gene3D - 257 343 - -
Trme14006g00001 456 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14006g00001 Trme-Chr14006 1 1368 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme14006g00001 Myb_DNA-binding 9.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14006g00001 - - gmx:100810588 699.893