Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140063g00001 ATTGAAGACAATAAGAAGATCAAGTGGTGTCCTGCTCCTGGTTGTAAACATGCTGTTAACTTTGACGGCGGAACTGGAAATTATGATGTGAGTTGTCTCTGTTCGTATAGCTTTTGTTGGAATTGCAATGAAGAGGCTCACCGTCCGGTGGATTGTGGCACCGTGTCAAAGTGGATTCTTGCAGAATCCGAAAACACRAACTGGATACTTGCTTACACAAAGCCATGTCCCAAGTGCAAGAGACCGATMRAWAAAAACCAAGGGTGCAGCCATATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGACAGAACATAATGGTCCTTGCAATCGTTATGAAGCAGCTGAACAGAATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAAATCAGTGGAGAAGTACACACATTATTATGAGCGATGGGCTAGCAACCACTCTTCAAGGCAAAAAGCTCTTGTTGATCTACAAAGGATGCACACTGTTTATATTGAGAAGCTTAGTGACTCACAGTGCCAAGCTAAGTTACAGCTTAAGTTCATAACTGAGG 571 0.4186 IEDNKKIKWCPAPGCKHAVNFDGGTGNYDVSCLCSYSFCWNCNEEAHRPVDCGTVSKWILAESENTNWILAYTKPCPKCKRPIXKNQGCSHMTCTPPCKFEFCWLCLGAWTEHNGPCNRYEAAEQNETEKRREMAKKSVEKYTHYYERWASNHSSRQKALVDLQRMHTVYIEKLSDSQCQAKLQLKFITE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140063g00001 190 Pfam IBR domain, a half RING-finger domain 73 114 IPR002867 GO:0008270
Trme140063g00001 190 Pfam IBR domain, a half RING-finger domain 1 52 IPR002867 GO:0008270
Trme140063g00001 190 Gene3D - 48 190 - -
Trme140063g00001 190 SUPERFAMILY RING/U-box 68 120 - -
Trme140063g00001 190 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 189 IPR031127 GO:0004842|GO:0016567
Trme140063g00001 190 ProSiteProfiles TRIAD supradomain profile. 1 121 IPR044066 -
Trme140063g00001 190 SUPERFAMILY RING/U-box 3 59 - -
Trme140063g00001 190 CDD BRcat_RBR_ANKIB1 1 60 - -
Trme140063g00001 190 SMART ibrneu5 1 52 IPR002867 GO:0008270
Trme140063g00001 190 SMART ibrneu5 56 117 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140063g00001 Trme-Chr140063 1 571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140063g00001 1 190 ARIADNE family AT1G65430 73.399 7.13e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140063g00001 K11968 - tpra:123896788 390.963