Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140033g00001 CATAAGCCTTTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTTGGACTCACTGTGGATGGAGACTTGTTTGTGGCGTGTAACGAGTGTGGTTTTCCGGTGTGCCGACCATGCTATGAATATGAAAGAAGGGAAGGGAGACAACTTTGTCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCTCGGGTTGAGGGAGATGATGATGAGGAGGATGTGGATGATATTGAACATGAATTTAACATTGAAGACAAAATTAACAATCATGATCATTCTGCTGAGGCTATGCTGCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATGCACACTTCCCAGCTGTTATTGCCGGCGGTCGCTCTCGGAAT 396 0.4621 HKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDKINNHDHSAEAMLHGKMSYGRGPEDDENAHFPAVIAGGRSRN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140033g00001 132 CDD mRING-HC-C4C4_CesA 10 60 - -
Trme140033g00001 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Trme140033g00001 132 ProSiteProfiles Zinc finger RING-type profile. 12 58 IPR001841 -
Trme140033g00001 132 SUPERFAMILY RING/U-box 2 84 - -
Trme140033g00001 132 MobiDBLite consensus disorder prediction 106 132 - -
Trme140033g00001 132 FunFam Cellulose synthase 1 85 - -
Trme140033g00001 132 Pfam Zinc-binding RING-finger 2 79 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140033g00001 Trme-Chr140033 18 569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140033g00001 2 130 Cell Wall Biosynthesis AT5G17420 82.946 7.14e-68 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140033g00001 K10999 - gmx:100789821 254.988