Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme140013g00001 ATGGTGATAAAGAAAGGTCCATGGACAGAGGATGAAGATGCTGTTCTGATGAACTATGTGGCTGTTCACGGCGAAGGTCATTGGAACTCTGTGGCTCGCTGTTCGGGTCTAAAGCGAACTGGGAAAAGTTGTAGATTAAGATGGTTGAACTACTTACGTCCGAATGTTCGACGTGGGAATATCACTTTACAAGAACAGATTTTGATTCTTGATCTCCATTCGCGTTGGGGAAACCG 236 0.4492 MVIKKGPWTEDEDAVLMNYVAVHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQILILDLHSRWGNR 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme140013g00001 79 SUPERFAMILY Homeodomain-like 6 79 IPR009057 -
Trme140013g00001 79 FunFam Myb transcription factor 5 57 - -
Trme140013g00001 79 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Trme140013g00001 79 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Trme140013g00001 79 Gene3D - 4 57 - -
Trme140013g00001 79 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 79 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trme140013g00001 79 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Trme140013g00001 79 SMART sant 4 54 IPR001005 -
Trme140013g00001 79 CDD SANT 7 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme140013g00001 Trme-Chr140013 271 506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme140013g00001 3 79 MYB Transcription Factor Family AT2G47190 74.026 6.24e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme140013g00001 Myb_DNA-binding 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme140013g00001 K09422 - gmx:778040 154.451