Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139894g00001 AACACTGCTCCTCAACCATCACCGGGAGAGGTTGGGGCACAGGCCGTGGCACTGAGAGTTACCGGCGATCAATCGGCATTCTATGGATGTGGATTTTATGGTGCACAGGACACACTCAATGATGATAGTGGGAGACATTATTTTAAGGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCT 192 0.4583 NTAPQPSPGEVGAQAVALRVTGDQSAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNA 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139894g00001 64 Gene3D - 1 64 IPR012334 -
Trme139894g00001 64 ProSitePatterns Pectinesterase signature 2. 53 62 IPR033131 -
Trme139894g00001 64 SUPERFAMILY Pectin lyase-like 9 64 IPR011050 -
Trme139894g00001 64 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 64 - -
Trme139894g00001 64 Pfam Pectinesterase 9 64 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139894g00001 Trme-Chr139894 1 192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139894g00001 1 64 Carbohydrate Esterase AT1G05310 78.125 1.12e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139894g00001 - - gmx:100802034 130.568