Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139855g00001 TGTGAACTTTGCAATCAACAAGCTTCTCTATATTGTCCTTCCGATTCCGCTTTTCTTTGCCGAAACTGCGACGACACCGTTCACCGTGCTAACTTCCTCGTCGCTCGTCACATCCGTCACATCATCTGCTCAAAATGCGACGGTTTCACCGGAAAATACATCTCCGGGACTACACTCCACCACCGACTCCGATCAACTTGTCGTTCTTGCTCGCCGGAAAATCATTCCGATGATGCCGATTCTCAATCTTCTTCATCTTTTGAGTCTTGCGTTACGGAACCAAAGGAGAGAAAARTTAAAAGGATGAAGAGTTTTTGGAGTTCTGTTACCGACGATGCATCTTCATCGGAGAAGAAGATGAGAAGAACTGAAAGTGTTGGATCGGTGGCGGAAGAGCTTTTTTTGAAATGGAGAAGAGAGTTAGGAATAGATTTTCCGGTGAACGGTAACGGTATAGCGGTGGAGGCGTTGGGTGTGTGTTTGAGAACGTGGAAGTTACTTCCGTTAAAGGTGGCTGCTGCGACGTCGTTTTGGTTGTGGTTAAGATTTTGTGGGGACGGTTGTCATGCC 570 0.4667 CELCNQQASLYCPSDSAFLCRNCDDTVHRANFLVARHIRHIICSKCDGFTGKYISGTTLHHRLRSTCRSCSPENHSDDADSQSSSSFESCVTEPKERKXKRMKSFWSSVTDDASSSEKKMRRTESVGSVAEELFLKWRRELGIDFPVNGNGIAVEALGVCLRTWKLLPLKVAAATSFWLWLRFCGDGCHA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139855g00001 190 CDD Bbox1_BBX-like 1 40 - -
Trme139855g00001 190 ProSiteProfiles Zinc finger B-box type profile. 1 37 IPR000315 GO:0008270
Trme139855g00001 190 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 104 - -
Trme139855g00001 190 Pfam B-box zinc finger 1 39 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139855g00001 Trme-Chr139855 1 570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139855g00001 1 179 C2C2-CO-like Transcription Factor Family AT3G21150 31.285 8.96e-20 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme139855g00001 zf-B_box 7.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139855g00001 - - vvo:131606085 214.927