Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139800g00001 ATGATGATCCGTAAGGATGAAACGGTCTCCATGATTGCTGGATCCTATGGATACATTGCCCCAGAATATGGATACTCCTTGAAAGTAGATGAAAAGATTGACATTTACAGCTTTGGAATAGTTCTGTTGGAGCTTATAACAGGAAAGCGGCCGGTAGATCCGGAGTTTGGAGAATCTATAGACATTGTAGGGTGGATTAGAAGGAAGATAGACAAAAATTCTCCAGAAGAGGCATTAGACCCAAGTGTAGGAAACTGTAAACATGTTCAAGAGGAGATGCTTTTAGTTCTCAGAATAGCACTTCTTTGCACTGCCAAGCTACCCAAGGACAGACCCTCCATGAGGGATGTTATAATGATGCTAGGAGAGGCAAAGCCTCGGAGAAA 386 0.4275 MMIRKDETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSFGIVLLELITGKRPVDPEFGESIDIVGWIRRKIDKNSPEEALDPSVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDVIMMLGEAKPRR 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139800g00001 128 Pfam Protein kinase domain 5 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139800g00001 128 Gene3D Transferase(Phosphotransferase) domain 1 2 128 - -
Trme139800g00001 128 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139800g00001 128 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 8 124 - -
Trme139800g00001 128 SUPERFAMILY Protein kinase-like (PK-like) 4 121 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139800g00001 Trme-Chr139800 1 548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139800g00001 1 128 Receptor kinase-like Gene Family AT1G08590 75.385 4.13e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme139800g00001 Pkinase 7.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139800g00001 - - gmx:100788430 236.498