Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139758g00001 ATGCGTCGAGGCCCTGATAATCAGTCTTATTATGTCTTAGGTCATAAGACTCCCAATATTCGTGATCTCTACACTCTTGGCCGTAAACTTGGTCAGGGTCAATTTGGCACCACTTATTTAGCCACCGACAATTCCACCTCCATTGAATATGCTTGCAAATCTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAACATTGTTACCATCAAGGGTGCCTATGAGGATGCACTCTATGTCCATATTGTCATGGAGCTATGTTCTGGTGGTGAGTTGTTTGATCGCATCATTCAGAGAGGTCACTATACCGAAAGGAAGGCTGCTGAGTTGACCAAAATTATTGTTGGTGTTGTTGAGGCCTGTCATTCCCTTGGTGTTATGCACAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTCAACAAAGATGATGATTTCTCTCTTAAAGCTATTGACTTTGGCCTCTCCGTTTTCTTCAAACCAG 535 0.357 MRRGPDNQSYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLATDNSTSIEYACKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIVTIKGAYEDALYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139758g00001 178 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 177 - -
Trme139758g00001 178 SMART serkin_6 24 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139758g00001 178 Pfam Protein kinase domain 24 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139758g00001 178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Trme139758g00001 178 Coils Coil 84 84 - -
Trme139758g00001 178 ProSiteProfiles Protein kinase domain profile. 24 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139758g00001 178 Gene3D Phosphorylase Kinase; domain 1 28 104 - -
Trme139758g00001 178 SUPERFAMILY Protein kinase-like (PK-like) 8 176 IPR011009 -
Trme139758g00001 178 Gene3D Transferase(Phosphotransferase) domain 1 60 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139758g00001 Trme-Chr139758 13 547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139758g00001 1 178 EF-hand Containing Proteins AT2G17290 76.404 3.55e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme139758g00001 Pkinase 8.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139758g00001 K13412 - gmx:100778173 283.878