Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13974g00001 TACACCACAATCAAGCCTCTGGGCGACCGGGTACTTCTAAAAATTAAGGAAGCAGAAGAGAAGACACAAGGTGGGATTTTGCTTCCATCAAATGCTCAAACAAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGACACCTGGGAAGAACCAAGTTGAAAATAGTGTGAAGCCGGGTGCACAAGTTGTGTATTCAAAGTATGCAGGTACTGAGGTTGATTTCAACGGTGAAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTTTTGATACAGATTGAAAAAGCTGAAGAAAAAACTGCCGGCGGTTTGTTTCTTACACAGGCAACCAAGGAGAAACCTTCCTTTGGAACGAATAATATGTTAAGCACAATTGGCATCATGGTTATAAATTGCGGTCGCGGATGCGGCAACAATTGCAGTTGTTGCTATTGTGGTCATTGTGGTTGCTGCAACGCGCAATGCGGCTGTTGCTTCTAA 540 0.4333 YTTIKPLGDRVLLKIKEAEEKTQGGILLPSNAQTKPQGGEVVAVGEGKTPGKNQVENSVKPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIQIEKAEEKTAGGLFLTQATKEKPSFGTNNMLSTIGIMVINCGRGCGNNCSCCYCGHCGCCNAQCGCCF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13974g00001 179 SMART Cpn10_2 3 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 FunFam 20 kDa chaperonin, chloroplastic 1 96 - -
Trme13974g00001 179 ProSitePatterns Chaperonins cpn10 signature. 102 126 IPR018369 GO:0005524|GO:0006457
Trme13974g00001 179 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 PRINTS 10kDa chaperonin signature 81 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 PRINTS 10kDa chaperonin signature 60 72 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 PRINTS 10kDa chaperonin signature 4 19 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 SUPERFAMILY GroES-like 100 138 IPR011032 -
Trme13974g00001 179 CDD cpn10 102 138 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 Pfam Chaperonin 10 Kd subunit 4 93 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 Pfam Chaperonin 10 Kd subunit 102 138 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 Hamap Co-chaperonin GroES [groES]. 3 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 CDD cpn10 3 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 Gene3D GroES chaperonin 1 96 IPR037124 GO:0006457
Trme13974g00001 179 Gene3D GroES chaperonin 97 160 IPR037124 GO:0006457
Trme13974g00001 179 PANTHER 10 KDA HEAT SHOCK PROTEIN 100 137 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme13974g00001 179 SUPERFAMILY GroES-like 2 95 IPR011032 -
Trme13974g00001 179 ProSitePatterns Chaperonins cpn10 signature. 4 28 IPR018369 GO:0005524|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13974g00001 Trme-Chr13974 105 1368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13974g00001 4 94 Calmodulin-binding Proteins AT5G20720 43.434 2.56e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13974g00001 K04078 - gmx:100814751 238.81