Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1396484g00001 ATGGACAAAAGTTCTATCCATGATGTTGTCCTTGTCGGTGGCTCTTCTAGAATTCCAAAAGTACAACAGCTGTTGCAAGAGTTTTTCAAGGGGAAGGAATTATGCCAAAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCTGCTATGTTATGTGATGGTTTTAAGAAT 183 0.4262 MDKSSIHDVVLVGGSSRIPKVQQLLQEFFKGKELCQSINPDEAVAYGAAVQAAMLCDGFKN 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1396484g00001 61 ProSitePatterns Heat shock hsp70 proteins family signature 3. 9 23 IPR018181 -
Trme1396484g00001 61 Gene3D - 39 53 - -
Trme1396484g00001 61 PRINTS 70kDa heat shock protein signature 6 22 - -
Trme1396484g00001 61 PRINTS 70kDa heat shock protein signature 38 58 - -
Trme1396484g00001 61 Pfam Hsp70 protein 1 56 IPR013126 GO:0005524|GO:0140662
Trme1396484g00001 61 FunFam heat shock 70 kDa protein-like 28 57 - -
Trme1396484g00001 61 Gene3D - 1 38 - -
Trme1396484g00001 61 PANTHER HEAT SHOCK PROTEIN 70KDA 1 55 IPR013126 GO:0005524|GO:0140662
Trme1396484g00001 61 SUPERFAMILY Actin-like ATPase domain 2 55 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1396484g00001 Trme-Chr1396484 1 183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1396484g00001 1 55 Calmodulin-binding Proteins AT3G12580 89.091 6.03e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1396484g00001 K03283 - ccaj:114916772 95.9005