Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139645g00001 TGTTTATTGGTACCTCTCATAAAGGTTACTAGACTGGTCAAAGAAGGAACTGGTAAAACAACATTGGCTATTGGTGATGGAGCTAATGATGTAGGAATGATTCAAGAGGCTGATGTAGGTGTTGGAATCAGTGGCGTTGAAGGAATGCAGGCTGTCATGTCTAGCGATATTGCAATTGCRCAATTCCGGTATTTGGAAAGACTGCTTCTTGTGCACGGACATTGGTGTTACCGGAGGATGTCCTCAATGGTAAGACCATTCAAACTGAATCTTAACATTCAATAG 285 0.4175 CLLVPLIKVTRLVKEGTGKTTLAIGDGANDVGMIQEADVGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMVRPFKLNLNIQ 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139645g00001 94 Gene3D - 6 69 IPR023214 -
Trme139645g00001 94 Pfam Phospholipid-translocating P-type ATPase C-terminal 52 85 IPR032630 -
Trme139645g00001 94 SUPERFAMILY HAD-like 15 79 IPR036412 -
Trme139645g00001 94 NCBIfam HAD-IC family P-type ATPase 11 84 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme139645g00001 94 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 8 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139645g00001 Trme-Chr139645 1 398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139645g00001 9 87 Primary Pumps ATPases AT1G68710 88.608 2.86e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139645g00001 K01530 - gmx:100776955 149.443