Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139498g00001 ATGTTTCATGACATGGATGGTGTACAATTTGGTGTTAAGATTGGAAGAGACAATCCAAGAATTTTCAGCTATGCAGAACTTTTCATAGGTTCTAATGGTTTCAATGAAGAACAAGTTTTAGGAAGTGGAGGATTTGGAAAAGTTTACAAAGCTCTTTTGCCAAGTGATGGAACTTTAGTAGCTGTGAAATGTTGTTTATCAGAAAAAGGTAAACAATTTGACAAAAGTTTCTTAGCCGAATTATCGGCTGTAGCCGATCTTCGACATAAGAATCTTGTTAGGTTAAGAGGTTGGTGTGTTCATGAAGATCAATTACATCTTGTTTATGATTACATGCCGAATCGAAGCCTTGACCGTGTACTCTTCCGAAAGCCGGAGAATTTGAAAGGTGAGCAGCCTCTTGGTTGGAGACAAAGAGAAAAAATTGTTAAAG 433 0.3718 MFHDMDGVQFGVKIGRDNPRIFSYAELFIGSNGFNEEQVLGSGGFGKVYKALLPSDGTLVAVKCCLSEKGKQFDKSFLAELSAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNRSLDRVLFRKPENLKGEQPLGWRQREKIVK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139498g00001 144 FunFam Receptor like protein kinase S.2 8 111 - -
Trme139498g00001 144 Gene3D Phosphorylase Kinase; domain 1 8 111 - -
Trme139498g00001 144 Pfam Protein kinase domain 34 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139498g00001 144 SMART tyrkin_6 34 142 IPR020635 GO:0004713|GO:0006468
Trme139498g00001 144 ProSiteProfiles Protein kinase domain profile. 34 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme139498g00001 144 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Trme139498g00001 144 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 144 - -
Trme139498g00001 144 SUPERFAMILY Protein kinase-like (PK-like) 19 142 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139498g00001 Trme-Chr139498 41 473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139498g00001 16 144 Receptor kinase-like Gene Family AT3G59740 50.388 2.53e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme139498g00001 Pkinase 1.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139498g00001 - - vun:114184452 252.292