Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme139478g00001 ATGGTAGATCCTGTGAGTCTTTGCACTGGTACTACATGTGAGAGATCTGCCATCGAAGTTTGGTTTGATGATGGAAATTTGACTGACCCCAAAACAGAAGAGGTTCTTGAAGATACTACCTTAAGATCAAATGTTCGATTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTTAGAATAAAGTCTATCAAGGAAAACTTATTATCCAATTCTGACTTATTGTTGAAAGAGTCCTTGAGCCAAATGCAGGCTCTTATAAGAGAGAACTCAATTAACAAGGATTGGATTTCTATAGGAGAGCTTACCGATACTATTATCACTATCCTTGGGAACTCTGATTCCACAGATGTCAAGATGAAGATCTTGATTACATTGAAGGATGCTGTAGAAGGGCATGCAAGAAACAAG 417 0.3765 MVDPVSLCTGTTCERSAIEVWFDDGNLTDPKTEEVLEDTTLRSNVRLRESIVEWRELNYCFRIKSIKENLLSNSDLLLKESLSQMQALIRENSINKDWISIGELTDTIITILGNSDSTDVKMKILITLKDAVEGHARNK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme139478g00001 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 61 IPR013083 -
Trme139478g00001 139 Pfam U-box domain 1 56 IPR003613 GO:0004842|GO:0016567
Trme139478g00001 139 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Trme139478g00001 139 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 139 - -
Trme139478g00001 139 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Trme139478g00001 139 SUPERFAMILY RING/U-box 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme139478g00001 Trme-Chr139478 82 498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme139478g00001 1 117 U-box Gene Family AT5G42340 32.836 3.07e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme139478g00001 - - psat:127083557 254.218